Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1473060Class a: All alpha proteins [46456] (285 folds)
  3. 1498032Fold a.100: 6-phosphogluconate dehydrogenase C-terminal domain-like [48178] (1 superfamily)
    multihelical; common core is formed around two long antiparallel helices related by (pseudo) twofold symmetry
  4. 1498033Superfamily a.100.1: 6-phosphogluconate dehydrogenase C-terminal domain-like [48179] (13 families) (S)
    N-terminal domain is Rossmann-fold with a family-specific C-terminal extension
  5. 1498233Family a.100.1.0: automated matches [227147] (1 protein)
    not a true family
  6. 1498234Protein automated matches [226851] (26 species)
    not a true protein

Species:

  1. 1498235Acinetobacter baylyi [TaxId:202950] [226523] (3 PDB entries)
    1. Domain for 4dyd:
    2. Domain for 4e12:
    3. Domain for 4e13:
  2. 1498239Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [231116] (1 PDB entry)
  3. 1498241Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [234425] (1 PDB entry)
  4. 1498244Clostridium butyricum [TaxId:632245] [256902] (3 PDB entries)
    1. Domain for 4kue:
    2. Domains for 4kug:
      1. 1498246Domain d4kuga2: 4kug A:184-282 [256907]
        Other proteins in same PDB: d4kuga1, d4kugb1
        automated match to d3hada1
        complexed with nad
      2. 1498247Domain d4kugb2: 4kug B:184-282 [256905]
        Other proteins in same PDB: d4kuga1, d4kugb1
        automated match to d3hada1
        complexed with nad
    3. Domain for 4kuh:
  5. 1498249Coxiella burnetii [TaxId:227377] [225777] (1 PDB entry)
  6. 1498252Coxiella burnetii [TaxId:777] [233715] (1 PDB entry)
  7. 1498255Escherichia coli K-12 [TaxId:83333] [225711] (3 PDB entries)
    1. Domains for 2zya:
      1. 1498260Domain d2zyaa2: 2zya A:177-466 [208005]
        Other proteins in same PDB: d2zyaa1, d2zyab1
        automated match to d1pgja1
        complexed with 6pg
      2. 1498261Domain d2zyab2: 2zya B:177-467 [208007]
        Other proteins in same PDB: d2zyaa1, d2zyab1
        automated match to d1pgja1
        complexed with 6pg
    2. Domains for 2zyd:
      1. 1498258Domain d2zyda2: 2zyd A:177-466 [208009]
        Other proteins in same PDB: d2zyda1, d2zydb1
        automated match to d1pgja1
        complexed with glo
      2. 1498259Domain d2zydb2: 2zyd B:177-467 [208011]
        Other proteins in same PDB: d2zyda1, d2zydb1
        automated match to d1pgja1
        complexed with glo
    3. Domains for 3fwn:
      1. 1498256Domain d3fwna2: 3fwn A:177-468 [210244]
        Other proteins in same PDB: d3fwna1, d3fwnb1
        automated match to d1pgja1
        complexed with 6pg, atr
      2. 1498257Domain d3fwnb2: 3fwn B:177-468 [210246]
        Other proteins in same PDB: d3fwna1, d3fwnb1
        automated match to d1pgja1
        complexed with 6pg, atr
  8. 1498262Escherichia coli [TaxId:199310] [226566] (1 PDB entry)
  9. 1498264Eubacterium barkeri [TaxId:1528] [225506] (1 PDB entry)
  10. 1498269Geobacillus stearothermophilus [TaxId:1422] [225640] (2 PDB entries)
    1. Domains for 2w8z:
      1. 1498272Domain d2w8za2: 2w8z A:176-469 [206711]
        Other proteins in same PDB: d2w8za1, d2w8zb1
        automated match to d1pgja1
        complexed with 6pg, so4, trs
      2. 1498273Domain d2w8zb2: 2w8z B:176-468 [206713]
        Other proteins in same PDB: d2w8za1, d2w8zb1
        automated match to d1pgja1
        complexed with 6pg, so4, trs
    2. Domains for 2w90:
      1. 1498270Domain d2w90a2: 2w90 A:176-469 [206715]
        Other proteins in same PDB: d2w90a1, d2w90b1
        automated match to d1pgja1
        complexed with 6pg, so4, trs
      2. 1498271Domain d2w90b2: 2w90 B:176-469 [206717]
        Other proteins in same PDB: d2w90a1, d2w90b1
        automated match to d1pgja1
        complexed with 6pg, so4, trs
  11. 1498274Geobacter metallireducens [TaxId:28232] [233234] (1 PDB entry)
  12. 1498283Geobacter sulfurreducens [TaxId:35554] [233220] (1 PDB entry)
  13. 1498292Human (Homo sapiens) [TaxId:9606] [225061] (13 PDB entries)
    1. Domains for 1wpq:
      1. 1498321Domain d1wpqa2: 1wpq A:194-349 [203014]
        Other proteins in same PDB: d1wpqa1, d1wpqb1
        automated match to d1evya1
        complexed with 13p, nad, so4
      2. 1498322Domain d1wpqb2: 1wpq B:194-349 [203016]
        Other proteins in same PDB: d1wpqa1, d1wpqb1
        automated match to d1evya1
        complexed with 13p, nad, so4
    2. Domains for 1x0v:
      1. 1498310Domain d1x0va2: 1x0v A:194-349 [203066]
        Other proteins in same PDB: d1x0va1, d1x0vb1
        automated match to d1evya1
        complexed with so4
      2. 1498311Domain d1x0vb2: 1x0v B:194-349 [203068]
        Other proteins in same PDB: d1x0va1, d1x0vb1
        automated match to d1evya1
        complexed with so4
    3. Domain for 1x0x:
    4. Domains for 2ger:
      1. 1498328Domain d2gera2: 2ger A:165-275 [241922]
        Other proteins in same PDB: d2gera1, d2gerb1, d2gerc1, d2gerd1, d2gere1
        automated match to d2izzb2
      2. 1498329Domain d2gerb2: 2ger B:165-275 [241924]
        Other proteins in same PDB: d2gera1, d2gerb1, d2gerc1, d2gerd1, d2gere1
        automated match to d2izzb2
      3. 1498330Domain d2gerc2: 2ger C:165-275 [241926]
        Other proteins in same PDB: d2gera1, d2gerb1, d2gerc1, d2gerd1, d2gere1
        automated match to d2izzb2
      4. 1498331Domain d2gerd2: 2ger D:165-275 [241928]
        Other proteins in same PDB: d2gera1, d2gerb1, d2gerc1, d2gerd1, d2gere1
        automated match to d2izzb2
      5. 1498332Domain d2gere2: 2ger E:165-275 [241930]
        Other proteins in same PDB: d2gera1, d2gerb1, d2gerc1, d2gerd1, d2gere1
        automated match to d2izzb2
    5. Domains for 2gf2:
      1. 1498312Domain d2gf2a2: 2gf2 A:202-335 [230745]
        Other proteins in same PDB: d2gf2a1, d2gf2b1, d2gf2c1, d2gf2d1
        automated match to d2gf2b2
      2. 1498313Domain d2gf2b2: 2gf2 B:202-332 [204360]
        Other proteins in same PDB: d2gf2a1, d2gf2b1, d2gf2c1, d2gf2d1
        automated match to d2cvza1
      3. 1498314Domain d2gf2c2: 2gf2 C:202-331 [204362]
        Other proteins in same PDB: d2gf2a1, d2gf2b1, d2gf2c1, d2gf2d1
        automated match to d2cvza1
      4. 1498315Domain d2gf2d2: 2gf2 D:202-333 [230747]
        Other proteins in same PDB: d2gf2a1, d2gf2b1, d2gf2c1, d2gf2d1
        automated match to d2gf2b2
    6. Domains for 2gr9:
      1. 1498333Domain d2gr9a2: 2gr9 A:165-275 [241954]
        Other proteins in same PDB: d2gr9a1, d2gr9b1, d2gr9c1, d2gr9d1, d2gr9e1
        automated match to d2izzb2
        complexed with glu, nai
      2. 1498334Domain d2gr9b2: 2gr9 B:165-275 [241956]
        Other proteins in same PDB: d2gr9a1, d2gr9b1, d2gr9c1, d2gr9d1, d2gr9e1
        automated match to d2izzb2
        complexed with glu, nai
      3. 1498335Domain d2gr9c2: 2gr9 C:165-275 [241958]
        Other proteins in same PDB: d2gr9a1, d2gr9b1, d2gr9c1, d2gr9d1, d2gr9e1
        automated match to d2izzb2
        complexed with glu, nai
      4. 1498336Domain d2gr9d2: 2gr9 D:165-275 [241960]
        Other proteins in same PDB: d2gr9a1, d2gr9b1, d2gr9c1, d2gr9d1, d2gr9e1
        automated match to d2izzb2
        complexed with glu, nai
      5. 1498337Domain d2gr9e2: 2gr9 E:165-275 [241962]
        Other proteins in same PDB: d2gr9a1, d2gr9b1, d2gr9c1, d2gr9d1, d2gr9e1
        automated match to d2izzb2
        complexed with glu, nai
    7. Domains for 2gra:
      1. 1498323Domain d2graa2: 2gra A:165-275 [241964]
        Other proteins in same PDB: d2graa1, d2grab1, d2grac1, d2grad1, d2grae1
        automated match to d2izzb2
        complexed with glu, nap
      2. 1498324Domain d2grab2: 2gra B:165-275 [241966]
        Other proteins in same PDB: d2graa1, d2grab1, d2grac1, d2grad1, d2grae1
        automated match to d2izzb2
        complexed with glu, nap
      3. 1498325Domain d2grac2: 2gra C:165-275 [241968]
        Other proteins in same PDB: d2graa1, d2grab1, d2grac1, d2grad1, d2grae1
        automated match to d2izzb2
        complexed with glu, nap
      4. 1498326Domain d2grad2: 2gra D:165-275 [241970]
        Other proteins in same PDB: d2graa1, d2grab1, d2grac1, d2grad1, d2grae1
        automated match to d2izzb2
        complexed with glu, nap
      5. 1498327Domain d2grae2: 2gra E:165-275 [241972]
        Other proteins in same PDB: d2graa1, d2grab1, d2grac1, d2grad1, d2grae1
        automated match to d2izzb2
        complexed with glu, nap
    8. Domains for 2i9p:
      1. 1498316Domain d2i9pa2: 2i9p A:202-332 [204755]
        Other proteins in same PDB: d2i9pa1, d2i9pb1, d2i9pc1, d2i9pd1
        automated match to d2cvza1
        complexed with nad
      2. 1498317Domain d2i9pb2: 2i9p B:202-335 [230784]
        Other proteins in same PDB: d2i9pa1, d2i9pb1, d2i9pc1, d2i9pd1
        automated match to d2i9pd2
        complexed with nad
      3. 1498318Domain d2i9pc2: 2i9p C:202-332 [204757]
        Other proteins in same PDB: d2i9pa1, d2i9pb1, d2i9pc1, d2i9pd1
        automated match to d2cvza1
        complexed with nad
      4. 1498319Domain d2i9pd2: 2i9p D:202-332 [204759]
        Other proteins in same PDB: d2i9pa1, d2i9pb1, d2i9pc1, d2i9pd1
        automated match to d2cvza1
        complexed with nad
    9. Domains for 2izz:
      1. 1498293Domain d2izza2: 2izz A:165-271 [230876]
        Other proteins in same PDB: d2izza1, d2izzb1, d2izzc1, d2izzd1, d2izze1
        automated match to d2rcya2
        complexed with edo, nad
      2. 1498294Domain d2izzb2: 2izz B:165-273 [230873]
        Other proteins in same PDB: d2izza1, d2izzb1, d2izzc1, d2izzd1, d2izze1
        automated match to d2rcya2
        complexed with edo, nad
      3. 1498295Domain d2izzc2: 2izz C:165-275 [230874]
        Other proteins in same PDB: d2izza1, d2izzb1, d2izzc1, d2izzd1, d2izze1
        automated match to d2rcya2
        complexed with edo, nad
      4. 1498296Domain d2izzd2: 2izz D:165-271 [230878]
        Other proteins in same PDB: d2izza1, d2izzb1, d2izzc1, d2izzd1, d2izze1
        automated match to d2rcya2
        complexed with edo, nad
      5. 1498297Domain d2izze2: 2izz E:165-272 [230880]
        Other proteins in same PDB: d2izza1, d2izzb1, d2izzc1, d2izzd1, d2izze1
        automated match to d2rcya2
        complexed with edo, nad
    10. Domains for 2jkv:
      1. 1498299Domain d2jkva2: 2jkv A:178-483 [205094]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
      2. 1498300Domain d2jkvb2: 2jkv B:178-483 [205096]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
      3. 1498301Domain d2jkvc2: 2jkv C:178-483 [205098]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
      4. 1498302Domain d2jkvd2: 2jkv D:178-483 [205100]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
      5. 1498303Domain d2jkve2: 2jkv E:178-483 [205102]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
      6. 1498304Domain d2jkvf2: 2jkv F:178-472 [205104]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
    11. Domain for 2pla:
    12. Domains for 2uyy:
      1. 1498305Domain d2uyya2: 2uyy A:430-553 [231335]
        Other proteins in same PDB: d2uyya1, d2uyyb1, d2uyyc1, d2uyyd1
        automated match to d3ckya2
        complexed with k, na7
      2. 1498306Domain d2uyyb2: 2uyy B:430-553 [231338]
        Other proteins in same PDB: d2uyya1, d2uyyb1, d2uyyc1, d2uyyd1
        automated match to d3ckya2
        complexed with k, na7
      3. 1498307Domain d2uyyc2: 2uyy C:430-553 [231336]
        Other proteins in same PDB: d2uyya1, d2uyyb1, d2uyyc1, d2uyyd1
        automated match to d3ckya2
        complexed with k, na7
      4. 1498308Domain d2uyyd2: 2uyy D:430-553 [231337]
        Other proteins in same PDB: d2uyya1, d2uyyb1, d2uyyc1, d2uyyd1
        automated match to d3ckya2
        complexed with k, na7
    13. Domain for 3rqs:
  14. 1498338Klebsiella pneumoniae [TaxId:573] [225754] (1 PDB entry)
  15. 1498341Lactococcus lactis [TaxId:1358] [225211] (4 PDB entries)
    1. Domain for 2iyo:
    2. Domains for 2iyp:
      1. 1498349Domain d2iypa2: 2iyp A:178-470 [204895]
        Other proteins in same PDB: d2iypa1, d2iypb1, d2iypc1
        automated match to d1pgja1
        complexed with 5rp, a2p, nap
      2. 1498350Domain d2iypb2: 2iyp B:178-470 [204897]
        Other proteins in same PDB: d2iypa1, d2iypb1, d2iypc1
        automated match to d1pgja1
        complexed with 5rp, a2p, nap
      3. 1498351Domain d2iypc2: 2iyp C:178-470 [204899]
        Other proteins in same PDB: d2iypa1, d2iypb1, d2iypc1
        automated match to d1pgja1
        complexed with 5rp, a2p, nap
    3. Domains for 2iz0:
      1. 1498345Domain d2iz0a2: 2iz0 A:178-470 [204901]
        Other proteins in same PDB: d2iz0a1, d2iz0b1, d2iz0c1
        automated match to d1pgja1
        complexed with atr, cl, edo, gol, nap, p33, peg, res
      2. 1498346Domain d2iz0b2: 2iz0 B:178-470 [204903]
        Other proteins in same PDB: d2iz0a1, d2iz0b1, d2iz0c1
        automated match to d1pgja1
        complexed with atr, cl, edo, gol, nap, p33, peg, res
      3. 1498347Domain d2iz0c2: 2iz0 C:178-470 [204905]
        Other proteins in same PDB: d2iz0a1, d2iz0b1, d2iz0c1
        automated match to d1pgja1
        complexed with atr, cl, edo, gol, nap, p33, peg, res
    4. Domains for 2iz1:
      1. 1498342Domain d2iz1a2: 2iz1 A:178-470 [204907]
        Other proteins in same PDB: d2iz1a1, d2iz1b1, d2iz1c1
        automated match to d1pgja1
        complexed with atr, cl, p33, peg, res
      2. 1498343Domain d2iz1b2: 2iz1 B:178-470 [204909]
        Other proteins in same PDB: d2iz1a1, d2iz1b1, d2iz1c1
        automated match to d1pgja1
        complexed with atr, cl, p33, peg, res
      3. 1498344Domain d2iz1c2: 2iz1 C:178-470 [204911]
        Other proteins in same PDB: d2iz1a1, d2iz1b1, d2iz1c1
        automated match to d1pgja1
        complexed with atr, cl, p33, peg, res
  16. 1498352Methanothermobacter marburgensis [TaxId:79929] [235008] (2 PDB entries)
    1. Domains for 4jjf:
      1. 1498353Domain d4jjfa2: 4jjf A:245-344 [235009]
        Other proteins in same PDB: d4jjfa1, d4jjfb1
        automated match to d2b0ja1
        complexed with fe9, n2i
      2. 1498354Domain d4jjfb2: 4jjf B:245-344 [235011]
        Other proteins in same PDB: d4jjfa1, d4jjfb1
        automated match to d2b0ja1
        complexed with fe9, n2i
    2. Domains for 4jjg:
      1. 1498355Domain d4jjga2: 4jjg A:245-344 [235014]
        Other proteins in same PDB: d4jjga1, d4jjgb1
        automated match to d2b0ja1
        complexed with fe9, ic9
      2. 1498356Domain d4jjgb2: 4jjg B:245-344 [235015]
        Other proteins in same PDB: d4jjga1, d4jjgb1
        automated match to d2b0ja1
        complexed with fe9, ic9
  17. 1498357Nematode (Caenorhabditis elegans) [TaxId:6239] [237814] (2 PDB entries)
    1. Domains for 4j0e:
      1. 1498358Domain d4j0ea2: 4j0e A:199-296 [240275]
        Other proteins in same PDB: d4j0ea1, d4j0eb1
        automated match to d4j0eb2
      2. 1498359Domain d4j0eb2: 4j0e B:199-296 [237815]
        Other proteins in same PDB: d4j0ea1, d4j0eb1
        automated match to d1f17a1
    2. Domains for 4j0f:
      1. 1498360Domain d4j0fa2: 4j0f A:199-296 [252778]
        Other proteins in same PDB: d4j0fa1, d4j0fb1
        automated match to d4j0eb2
      2. 1498361Domain d4j0fb2: 4j0f B:199-296 [252780]
        Other proteins in same PDB: d4j0fa1, d4j0fb1
        automated match to d4j0eb2
  18. 1498362Plasmodium falciparum [TaxId:36329] [225360] (2 PDB entries)
    1. Domains for 1yj8:
      1. 1498368Domain d1yj8a2: 1yj8 A:216-372 [241033]
        Other proteins in same PDB: d1yj8a1, d1yj8b1, d1yj8c1
        automated match to d2plaa2
      2. 1498369Domain d1yj8b2: 1yj8 B:216-372 [241035]
        Other proteins in same PDB: d1yj8a1, d1yj8b1, d1yj8c1
        automated match to d2plaa2
      3. 1498370Domain d1yj8c2: 1yj8 C:216-372 [241037]
        Other proteins in same PDB: d1yj8a1, d1yj8b1, d1yj8c1
        automated match to d2plaa2
    2. Domains for 2rcy:
      1. 1498363Domain d2rcya2: 2rcy A:157-262 [206075]
        Other proteins in same PDB: d2rcya1, d2rcyb1, d2rcyc1, d2rcyd1, d2rcye1
        automated match to d2ahra1
        complexed with gol, mg, nap
      2. 1498364Domain d2rcyb2: 2rcy B:157-262 [206077]
        Other proteins in same PDB: d2rcya1, d2rcyb1, d2rcyc1, d2rcyd1, d2rcye1
        automated match to d2ahra1
        complexed with gol, mg, nap
      3. 1498365Domain d2rcyc2: 2rcy C:157-262 [206079]
        Other proteins in same PDB: d2rcya1, d2rcyb1, d2rcyc1, d2rcyd1, d2rcye1
        automated match to d2ahra1
        complexed with gol, mg, nap
      4. 1498366Domain d2rcyd2: 2rcy D:157-262 [206081]
        Other proteins in same PDB: d2rcya1, d2rcyb1, d2rcyc1, d2rcyd1, d2rcye1
        automated match to d2ahra1
        complexed with gol, mg, nap
      5. 1498367Domain d2rcye2: 2rcy E:157-262 [206083]
        Other proteins in same PDB: d2rcya1, d2rcyb1, d2rcyc1, d2rcyd1, d2rcye1
        automated match to d2ahra1
        complexed with gol, mg, nap
  19. 1498371Polaromonas sp. [TaxId:296591] [226305] (1 PDB entry)
  20. 1498374Pyrobaculum calidifontis [TaxId:410359] [236095] (2 PDB entries)
    1. Domain for 3w6u:
    2. Domain for 3w6z:
  21. 1498377Salmonella typhimurium [TaxId:602] [232221] (1 PDB entry)
  22. 1498379Salmonella typhimurium [TaxId:99287] [230411] (1 PDB entry)
  23. 1498382Slackia exigua [TaxId:649764] [226701] (2 PDB entries)
    1. Domains for 4kqw:
      1. 1498383Domain d4kqwa2: 4kqw A:194-338 [224447]
        Other proteins in same PDB: d4kqwa1, d4kqwb1
        automated match to d1np3a1
        complexed with mg, nap, tla
      2. 1498384Domain d4kqwb2: 4kqw B:194-337 [224449]
        Other proteins in same PDB: d4kqwa1, d4kqwb1
        automated match to d1np3a1
        complexed with mg, nap, tla
    2. Domains for 4kqx:
      1. 1498385Domain d4kqxa2: 4kqx A:194-335 [224451]
        Other proteins in same PDB: d4kqxa1, d4kqxb1
        automated match to d1np3a1
        complexed with hio, his, mg, nad; mutant
      2. 1498386Domain d4kqxb2: 4kqx B:194-344 [224453]
        Other proteins in same PDB: d4kqxa1, d4kqxb1
        automated match to d1np3a1
        complexed with hio, his, mg, nad; mutant
  24. 1498387Thale cress (Arabidopsis thaliana) [TaxId:3702] [255801] (1 PDB entry)
  25. Thermotoga maritima [TaxId:2336] [255232] (1 PDB entry)
  26. 1498391Thermotoga maritima [TaxId:243274] [224972] (1 PDB entry)

More info for Protein automated matches from a.100.1.0: automated matches

Timeline for Protein automated matches from a.100.1.0: automated matches: