Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1253684Class a: All alpha proteins [46456] (284 folds)
  3. 1276308Fold a.100: 6-phosphogluconate dehydrogenase C-terminal domain-like [48178] (1 superfamily)
    multihelical; common core is formed around two long antiparallel helices related by (pseudo) twofold symmetry
  4. 1276309Superfamily a.100.1: 6-phosphogluconate dehydrogenase C-terminal domain-like [48179] (13 families) (S)
    N-terminal domain is Rossmann-fold with a family-specific C-terminal extension
  5. 1276508Family a.100.1.0: automated matches [227147] (1 protein)
    not a true family
  6. 1276509Protein automated matches [226851] (23 species)
    not a true protein

Species:

  1. 1276510Acinetobacter baylyi [TaxId:202950] [226523] (3 PDB entries)
    1. Domain for 4dyd:
    2. Domain for 4e12:
    3. Domain for 4e13:
  2. 1276514Caenorhabditis elegans [TaxId:6239] [237814] (1 PDB entry)
  3. 1276516Coxiella burnetii [TaxId:227377] [225777] (1 PDB entry)
  4. 1276519Coxiella burnetii [TaxId:777] [233715] (1 PDB entry)
  5. 1276521Escherichia coli [TaxId:199310] [226566] (1 PDB entry)
  6. 1276523Escherichia coli [TaxId:83333] [225711] (3 PDB entries)
    1. Domains for 2zya:
      1. 1276528Domain d2zyaa2: 2zya A:177-466 [208005]
        Other proteins in same PDB: d2zyaa1, d2zyab1
        automated match to d1pgja1
        complexed with 6pg
      2. 1276529Domain d2zyab2: 2zya B:177-467 [208007]
        Other proteins in same PDB: d2zyaa1, d2zyab1
        automated match to d1pgja1
        complexed with 6pg
    2. Domains for 2zyd:
      1. 1276526Domain d2zyda2: 2zyd A:177-466 [208009]
        Other proteins in same PDB: d2zyda1, d2zydb1
        automated match to d1pgja1
        complexed with glo
      2. 1276527Domain d2zydb2: 2zyd B:177-467 [208011]
        Other proteins in same PDB: d2zyda1, d2zydb1
        automated match to d1pgja1
        complexed with glo
    3. Domains for 3fwn:
      1. 1276524Domain d3fwna2: 3fwn A:177-468 [210244]
        Other proteins in same PDB: d3fwna1, d3fwnb1
        automated match to d1pgja1
        complexed with 6pg, atr
      2. 1276525Domain d3fwnb2: 3fwn B:177-468 [210246]
        Other proteins in same PDB: d3fwna1, d3fwnb1
        automated match to d1pgja1
        complexed with 6pg, atr
  7. 1276530Eubacterium barkeri [TaxId:1528] [225506] (1 PDB entry)
  8. 1276535Geobacillus stearothermophilus [TaxId:1422] [225640] (2 PDB entries)
    1. Domains for 2w8z:
      1. 1276538Domain d2w8za2: 2w8z A:176-469 [206711]
        Other proteins in same PDB: d2w8za1, d2w8zb1
        automated match to d1pgja1
        complexed with 6pg, so4, trs
      2. 1276539Domain d2w8zb2: 2w8z B:176-468 [206713]
        Other proteins in same PDB: d2w8za1, d2w8zb1
        automated match to d1pgja1
        complexed with 6pg, so4, trs
    2. Domains for 2w90:
      1. 1276536Domain d2w90a2: 2w90 A:176-469 [206715]
        Other proteins in same PDB: d2w90a1, d2w90b1
        automated match to d1pgja1
        complexed with 6pg, so4, trs
      2. 1276537Domain d2w90b2: 2w90 B:176-469 [206717]
        Other proteins in same PDB: d2w90a1, d2w90b1
        automated match to d1pgja1
        complexed with 6pg, so4, trs
  9. 1276540Geobacter metallireducens [TaxId:28232] [233234] (1 PDB entry)
  10. 1276542Geobacter sulfurreducens [TaxId:35554] [233220] (1 PDB entry)
  11. 1276549Human (Homo sapiens) [TaxId:9606] [225061] (10 PDB entries)
    1. Domains for 1wpq:
      1. 1276578Domain d1wpqa2: 1wpq A:194-349 [203014]
        Other proteins in same PDB: d1wpqa1, d1wpqb1
        automated match to d1evya1
        complexed with 13p, nad, so4
      2. 1276579Domain d1wpqb2: 1wpq B:194-349 [203016]
        Other proteins in same PDB: d1wpqa1, d1wpqb1
        automated match to d1evya1
        complexed with 13p, nad, so4
    2. Domains for 1x0v:
      1. 1276567Domain d1x0va2: 1x0v A:194-349 [203066]
        Other proteins in same PDB: d1x0va1, d1x0vb1
        automated match to d1evya1
        complexed with so4
      2. 1276568Domain d1x0vb2: 1x0v B:194-349 [203068]
        Other proteins in same PDB: d1x0va1, d1x0vb1
        automated match to d1evya1
        complexed with so4
    3. Domain for 1x0x:
    4. Domains for 2gf2:
      1. 1276569Domain d2gf2a2: 2gf2 A:202-335 [230745]
        Other proteins in same PDB: d2gf2a1, d2gf2b1, d2gf2c1, d2gf2d1
        automated match to d2gf2b2
      2. 1276570Domain d2gf2b2: 2gf2 B:202-332 [204360]
        Other proteins in same PDB: d2gf2a1, d2gf2b1, d2gf2c1, d2gf2d1
        automated match to d2cvza1
      3. 1276571Domain d2gf2c2: 2gf2 C:202-331 [204362]
        Other proteins in same PDB: d2gf2a1, d2gf2b1, d2gf2c1, d2gf2d1
        automated match to d2cvza1
      4. 1276572Domain d2gf2d2: 2gf2 D:202-333 [230747]
        Other proteins in same PDB: d2gf2a1, d2gf2b1, d2gf2c1, d2gf2d1
        automated match to d2gf2b2
    5. Domains for 2i9p:
      1. 1276573Domain d2i9pa2: 2i9p A:202-332 [204755]
        Other proteins in same PDB: d2i9pa1, d2i9pb1, d2i9pc1, d2i9pd1
        automated match to d2cvza1
        complexed with nad
      2. 1276574Domain d2i9pb2: 2i9p B:202-335 [230784]
        Other proteins in same PDB: d2i9pa1, d2i9pb1, d2i9pc1, d2i9pd1
        automated match to d2i9pd2
        complexed with nad
      3. 1276575Domain d2i9pc2: 2i9p C:202-332 [204757]
        Other proteins in same PDB: d2i9pa1, d2i9pb1, d2i9pc1, d2i9pd1
        automated match to d2cvza1
        complexed with nad
      4. 1276576Domain d2i9pd2: 2i9p D:202-332 [204759]
        Other proteins in same PDB: d2i9pa1, d2i9pb1, d2i9pc1, d2i9pd1
        automated match to d2cvza1
        complexed with nad
    6. Domains for 2izz:
      1. 1276550Domain d2izza2: 2izz A:165-271 [230876]
        Other proteins in same PDB: d2izza1, d2izzb1, d2izzc1, d2izzd1, d2izze1
        automated match to d2rcya2
        complexed with edo, nad
      2. 1276551Domain d2izzb2: 2izz B:165-273 [230873]
        Other proteins in same PDB: d2izza1, d2izzb1, d2izzc1, d2izzd1, d2izze1
        automated match to d2rcya2
        complexed with edo, nad
      3. 1276552Domain d2izzc2: 2izz C:165-275 [230874]
        Other proteins in same PDB: d2izza1, d2izzb1, d2izzc1, d2izzd1, d2izze1
        automated match to d2rcya2
        complexed with edo, nad
      4. 1276553Domain d2izzd2: 2izz D:165-271 [230878]
        Other proteins in same PDB: d2izza1, d2izzb1, d2izzc1, d2izzd1, d2izze1
        automated match to d2rcya2
        complexed with edo, nad
      5. 1276554Domain d2izze2: 2izz E:165-272 [230880]
        Other proteins in same PDB: d2izza1, d2izzb1, d2izzc1, d2izzd1, d2izze1
        automated match to d2rcya2
        complexed with edo, nad
    7. Domains for 2jkv:
      1. 1276556Domain d2jkva2: 2jkv A:178-483 [205094]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
      2. 1276557Domain d2jkvb2: 2jkv B:178-483 [205096]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
      3. 1276558Domain d2jkvc2: 2jkv C:178-483 [205098]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
      4. 1276559Domain d2jkvd2: 2jkv D:178-483 [205100]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
      5. 1276560Domain d2jkve2: 2jkv E:178-483 [205102]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
      6. 1276561Domain d2jkvf2: 2jkv F:178-472 [205104]
        Other proteins in same PDB: d2jkva1, d2jkvb1, d2jkvc1, d2jkvd1, d2jkve1, d2jkvf1
        automated match to d1pgja1
        complexed with cl, nap, so4
    8. Domain for 2pla:
    9. Domains for 2uyy:
      1. 1276562Domain d2uyya2: 2uyy A:430-553 [231335]
        Other proteins in same PDB: d2uyya1, d2uyyb1, d2uyyc1, d2uyyd1
        automated match to d3ckya2
        complexed with k, na7
      2. 1276563Domain d2uyyb2: 2uyy B:430-553 [231338]
        Other proteins in same PDB: d2uyya1, d2uyyb1, d2uyyc1, d2uyyd1
        automated match to d3ckya2
        complexed with k, na7
      3. 1276564Domain d2uyyc2: 2uyy C:430-553 [231336]
        Other proteins in same PDB: d2uyya1, d2uyyb1, d2uyyc1, d2uyyd1
        automated match to d3ckya2
        complexed with k, na7
      4. 1276565Domain d2uyyd2: 2uyy D:430-553 [231337]
        Other proteins in same PDB: d2uyya1, d2uyyb1, d2uyyc1, d2uyyd1
        automated match to d3ckya2
        complexed with k, na7
    10. Domain for 3rqs:
  12. 1276580Klebsiella pneumoniae [TaxId:573] [225754] (1 PDB entry)
  13. 1276583Lactococcus lactis [TaxId:1358] [225211] (4 PDB entries)
    1. Domain for 2iyo:
    2. Domains for 2iyp:
      1. 1276591Domain d2iypa2: 2iyp A:178-470 [204895]
        Other proteins in same PDB: d2iypa1, d2iypb1, d2iypc1
        automated match to d1pgja1
        complexed with 5rp, a2p, nap
      2. 1276592Domain d2iypb2: 2iyp B:178-470 [204897]
        Other proteins in same PDB: d2iypa1, d2iypb1, d2iypc1
        automated match to d1pgja1
        complexed with 5rp, a2p, nap
      3. 1276593Domain d2iypc2: 2iyp C:178-470 [204899]
        Other proteins in same PDB: d2iypa1, d2iypb1, d2iypc1
        automated match to d1pgja1
        complexed with 5rp, a2p, nap
    3. Domains for 2iz0:
      1. 1276587Domain d2iz0a2: 2iz0 A:178-470 [204901]
        Other proteins in same PDB: d2iz0a1, d2iz0b1, d2iz0c1
        automated match to d1pgja1
        complexed with atr, cl, edo, gol, nap, p33, peg, res
      2. 1276588Domain d2iz0b2: 2iz0 B:178-470 [204903]
        Other proteins in same PDB: d2iz0a1, d2iz0b1, d2iz0c1
        automated match to d1pgja1
        complexed with atr, cl, edo, gol, nap, p33, peg, res
      3. 1276589Domain d2iz0c2: 2iz0 C:178-470 [204905]
        Other proteins in same PDB: d2iz0a1, d2iz0b1, d2iz0c1
        automated match to d1pgja1
        complexed with atr, cl, edo, gol, nap, p33, peg, res
    4. Domains for 2iz1:
      1. 1276584Domain d2iz1a2: 2iz1 A:178-470 [204907]
        Other proteins in same PDB: d2iz1a1, d2iz1b1, d2iz1c1
        automated match to d1pgja1
        complexed with atr, cl, p33, peg, res
      2. 1276585Domain d2iz1b2: 2iz1 B:178-470 [204909]
        Other proteins in same PDB: d2iz1a1, d2iz1b1, d2iz1c1
        automated match to d1pgja1
        complexed with atr, cl, p33, peg, res
      3. 1276586Domain d2iz1c2: 2iz1 C:178-470 [204911]
        Other proteins in same PDB: d2iz1a1, d2iz1b1, d2iz1c1
        automated match to d1pgja1
        complexed with atr, cl, p33, peg, res
  14. 1276594Methanothermobacter marburgensis [TaxId:79929] [235008] (2 PDB entries)
    1. Domains for 4jjf:
      1. 1276595Domain d4jjfa2: 4jjf A:245-344 [235009]
        Other proteins in same PDB: d4jjfa1, d4jjfb1
        automated match to d2b0ja1
        complexed with fe9, n2i
      2. 1276596Domain d4jjfb2: 4jjf B:245-344 [235011]
        Other proteins in same PDB: d4jjfa1, d4jjfb1
        automated match to d2b0ja1
        complexed with fe9, n2i
    2. Domains for 4jjg:
      1. 1276597Domain d4jjga2: 4jjg A:245-344 [235014]
        Other proteins in same PDB: d4jjga1, d4jjgb1
        automated match to d2b0ja1
        complexed with fe9, ic9
      2. 1276598Domain d4jjgb2: 4jjg B:245-344 [235015]
        Other proteins in same PDB: d4jjga1, d4jjgb1
        automated match to d2b0ja1
        complexed with fe9, ic9
  15. 1276599Plasmodium falciparum [TaxId:36329] [225360] (1 PDB entry)
  16. 1276605Polaromonas sp. [TaxId:296591] [226305] (1 PDB entry)
  17. 1276608Pyrobaculum calidifontis [TaxId:410359] [236095] (1 PDB entry)
  18. 1276610Saccharomyces cerevisiae [TaxId:4932] [231116] (1 PDB entry)
  19. 1276612Saccharomyces cerevisiae [TaxId:559292] [234425] (1 PDB entry)
  20. 1276614Salmonella typhimurium [TaxId:602] [232221] (1 PDB entry)
  21. 1276616Salmonella typhimurium [TaxId:99287] [230411] (1 PDB entry)
  22. 1276619Slackia exigua [TaxId:649764] [226701] (2 PDB entries)
    1. Domains for 4kqw:
      1. 1276620Domain d4kqwa2: 4kqw A:194-338 [224447]
        Other proteins in same PDB: d4kqwa1, d4kqwb1
        automated match to d1np3a1
        complexed with mg, nap, tla
      2. 1276621Domain d4kqwb2: 4kqw B:194-337 [224449]
        Other proteins in same PDB: d4kqwa1, d4kqwb1
        automated match to d1np3a1
        complexed with mg, nap, tla
    2. Domains for 4kqx:
      1. 1276622Domain d4kqxa2: 4kqx A:194-335 [224451]
        Other proteins in same PDB: d4kqxa1, d4kqxb1
        automated match to d1np3a1
        complexed with hio, his, mg, nad; mutant
      2. 1276623Domain d4kqxb2: 4kqx B:194-344 [224453]
        Other proteins in same PDB: d4kqxa1, d4kqxb1
        automated match to d1np3a1
        complexed with hio, his, mg, nad; mutant
  23. 1276624Thermotoga maritima [TaxId:243274] [224972] (1 PDB entry)

More info for Protein automated matches from a.100.1.0: automated matches

Timeline for Protein automated matches from a.100.1.0: automated matches: