SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.109: PEP carboxykinase N-terminal domain [68922] (1 superfamily)
contains mixed beta-sheets; topology is partly similar to that of the catalytic C-terminal domain
Superfamily c.109.1: PEP carboxykinase N-terminal domain [68923] (2 families)
Family c.109.1.0: automated matches [227144] (1 protein)
not a true family
Protein automated matches [226847] (5 species)
not a true protein

Species:

Anaerobiospirillum succiniciproducens [TaxId:13335] [230434] (2 PDB entries)
1. Domains for 1ytm:
  1. Domain d1ytma1: 1ytm A:2-220 [230435]
    Other proteins in same PDB: d1ytma2, d1ytmb2
    automated match to d1os1a2
    complexed with atp, mg, mn, oxd
  2. Domain d1ytmb1: 1ytm B:1002-1220 [230438]
    Other proteins in same PDB: d1ytma2, d1ytmb2
    automated match to d1os1a2
    complexed with atp, mg, mn, oxd
2. Domains for 1yvy:
  1. Domain d1yvya1: 1yvy A:2-220 [241074]
    Other proteins in same PDB: d1yvya2, d1yvyb2
    automated match to d1ytma1
  2. Domain d1yvyb1: 1yvy B:1002-1220 [241076]
    Other proteins in same PDB: d1yvya2, d1yvyb2
    automated match to d1ytma1
Chicken (Gallus gallus) [TaxId:9031] [225083] (3 PDB entries)
1. Domains for 2faf:
  1. Domain d2fafa1: 2faf A:34-278 [204176]
    Other proteins in same PDB: d2fafa2, d2fafb2
    automated match to d1khba2
    complexed with 1pe, 20s, epe, mn
  2. Domain d2fafb1: 2faf B:34-278 [204178]
    Other proteins in same PDB: d2fafa2, d2fafb2
    automated match to d1khba2
    complexed with 1pe, 20s, epe, mn
2. Domains for 2fah:
  1. Domain d2faha1: 2fah A:34-278 [204180]
    Other proteins in same PDB: d2faha2, d2fahb2, d2fahc2, d2fahd2
    automated match to d1khba2
    complexed with 20s, gdp, mla, mn
  2. Domain d2fahb1: 2fah B:34-278 [204182]
    Other proteins in same PDB: d2faha2, d2fahb2, d2fahc2, d2fahd2
    automated match to d1khba2
    complexed with 20s, gdp, mla, mn
  3. Domain d2fahc1: 2fah C:34-278 [204184]
    Other proteins in same PDB: d2faha2, d2fahb2, d2fahc2, d2fahd2
    automated match to d1khba2
    complexed with 20s, gdp, mla, mn
  4. Domain d2fahd1: 2fah D:34-278 [204186]
    Other proteins in same PDB: d2faha2, d2fahb2, d2fahc2, d2fahd2
    automated match to d1khba2
    complexed with 20s, gdp, mla, mn
3. Domains for 2qzy:
  1. Domain d2qzya1: 2qzy A:34-278 [205916]
    Other proteins in same PDB: d2qzya2, d2qzyb2
    automated match to d1khba2
    complexed with 20s, epe, mn, pep
  2. Domain d2qzyb1: 2qzy B:34-278 [205918]
    Other proteins in same PDB: d2qzya2, d2qzyb2
    automated match to d1khba2
    complexed with 20s, epe, mn, pep
Corynebacterium glutamicum [TaxId:1718] [225441] (1 PDB entry)
- Domains for 2zci:
  1. Domain d2zcia1: 2zci A:13-245 [207814]
    Other proteins in same PDB: d2zcia2, d2zcib2, d2zcic2, d2zcid2
    automated match to d1khba2
  2. Domain d2zcib1: 2zci B:13-245 [207816]
    Other proteins in same PDB: d2zcia2, d2zcib2, d2zcic2, d2zcid2
    automated match to d1khba2
  3. Domain d2zcic1: 2zci C:13-245 [207818]
    Other proteins in same PDB: d2zcia2, d2zcib2, d2zcic2, d2zcid2
    automated match to d1khba2
  4. Domain d2zcid1: 2zci D:15-245 [207820]
    Other proteins in same PDB: d2zcia2, d2zcib2, d2zcic2, d2zcid2
    automated match to d1khba2
Mycobacterium tuberculosis [TaxId:419947] [260615] (7 PDB entries)
1. Domain for 4wie:
  - Domain d4wiea1: 4wie A:-1-244 [260619]
    Other proteins in same PDB: d4wiea2
    automated match to d3dt2a1
    complexed with gol, mn
2. Domain for 4wiu:
  - Domain d4wiua1: 4wiu A:-1-244 [260616]
    Other proteins in same PDB: d4wiua2
    automated match to d1khba2
    complexed with gol, mn, oxl
3. Domain for 4wl8:
  - Domain d4wl8a1: 4wl8 A:-1-244 [278435]
    Other proteins in same PDB: d4wl8a2
    automated match to d4wiua1
    complexed with gnp, gol, mn
4. Domain for 4wou:
  - Domain d4woua1: 4wou A:12-244 [279022]
    Other proteins in same PDB: d4woua2
    automated match to d4wiua1
    complexed with gdp, gol, mn, po4, zn
5. Domain for 4wpt:
  - Domain d4wpta1: 4wpt A:-1-244 [279025]
    Other proteins in same PDB: d4wpta2
    automated match to d4wiua1
    complexed with gol, pep, po4
6. Domain for 4wpu:
  - Domain d4wpua1: 4wpu A:-1-244 [279027]
    Other proteins in same PDB: d4wpua2
    automated match to d4wiua1
    complexed with gdp, gol, pep; mutant
7. Domain for 4wpv:
  - Domain d4wpva1: 4wpv A:13-244 [279021]
    Other proteins in same PDB: d4wpva2
    automated match to d4wiua1
    complexed with gol, po4, zn; mutant
Mycobacterium tuberculosis [TaxId:83332] [271217] (2 PDB entries)
1. Domain for 4r43:
  - Domain d4r43a1: 4r43 A:6-244 [271219]
    Other proteins in same PDB: d4r43a2
    automated match to d4wiua1
    complexed with gdp, mn, peg, po4
2. Domain for 4rcg:
  - Domain d4rcga1: 4rcg A:8-244 [271222]
    Other proteins in same PDB: d4rcga2
    automated match to d4wiua1
    complexed with gdp, mg, peg

More info for Protein automated matches from c.109.1.0: automated matches

Timeline for Protein automated matches from c.109.1.0: automated matches:

Protein automated matches from c.109.1.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from c.109.1.0: automated matches appears in SCOPe 2.04
Protein automated matches from c.109.1.0: automated matches appears in SCOPe 2.06
Protein automated matches from c.109.1.0: automated matches appears in the current release, SCOPe 2.08