Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2501110Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2503593Superfamily d.15.6: Superantigen toxins, C-terminal domain [54334] (2 families) (S)
  5. 2503814Family d.15.6.0: automated matches [227139] (1 protein)
    not a true family
  6. 2503815Protein automated matches [226841] (5 species)
    not a true protein

Species:

  1. 2503816Staphylococcus aureus [TaxId:1280] [225055] (8 PDB entries)
    1. Domain for 1xxg:
    2. Domain for 2rdg:
    3. Domain for 2rdh:
    4. Domains for 3mc0:
      1. 2503819Domain d3mc0b2: 3mc0 B:116-233 [199824]
        Other proteins in same PDB: d3mc0a_, d3mc0b1, d3mc0c_, d3mc0d1
        automated match to d1d5zc2
        complexed with act
      2. 2503820Domain d3mc0d2: 3mc0 D:116-233 [199826]
        Other proteins in same PDB: d3mc0a_, d3mc0b1, d3mc0c_, d3mc0d1
        automated match to d1d5zc2
        complexed with act
    5. Domains for 3owe:
      1. 2503823Domain d3oweb2: 3owe B:116-233 [200166]
        Other proteins in same PDB: d3owea_, d3oweb1, d3oweb3, d3owec_, d3owed1, d3owed3, d3owee_, d3owef1, d3owef3, d3oweg_, d3oweh1, d3oweh3, d3owei_, d3owej1, d3owej3, d3owek_, d3owel1, d3owel3, d3owem_, d3owen1, d3owen3, d3oweo_, d3owep1, d3owep3
        automated match to d1d5zc2
        mutant
      2. 2503824Domain d3owed2: 3owe D:116-233 [200168]
        Other proteins in same PDB: d3owea_, d3oweb1, d3oweb3, d3owec_, d3owed1, d3owed3, d3owee_, d3owef1, d3owef3, d3oweg_, d3oweh1, d3oweh3, d3owei_, d3owej1, d3owej3, d3owek_, d3owel1, d3owel3, d3owem_, d3owen1, d3owen3, d3oweo_, d3owep1, d3owep3
        automated match to d1d5zc2
        mutant
      3. 2503825Domain d3owef2: 3owe F:116-233 [200170]
        Other proteins in same PDB: d3owea_, d3oweb1, d3oweb3, d3owec_, d3owed1, d3owed3, d3owee_, d3owef1, d3owef3, d3oweg_, d3oweh1, d3oweh3, d3owei_, d3owej1, d3owej3, d3owek_, d3owel1, d3owel3, d3owem_, d3owen1, d3owen3, d3oweo_, d3owep1, d3owep3
        automated match to d1d5zc2
        mutant
      4. 2503826Domain d3oweh2: 3owe H:116-233 [200172]
        Other proteins in same PDB: d3owea_, d3oweb1, d3oweb3, d3owec_, d3owed1, d3owed3, d3owee_, d3owef1, d3owef3, d3oweg_, d3oweh1, d3oweh3, d3owei_, d3owej1, d3owej3, d3owek_, d3owel1, d3owel3, d3owem_, d3owen1, d3owen3, d3oweo_, d3owep1, d3owep3
        automated match to d1d5zc2
        mutant
      5. 2503827Domain d3owej2: 3owe J:116-233 [200174]
        Other proteins in same PDB: d3owea_, d3oweb1, d3oweb3, d3owec_, d3owed1, d3owed3, d3owee_, d3owef1, d3owef3, d3oweg_, d3oweh1, d3oweh3, d3owei_, d3owej1, d3owej3, d3owek_, d3owel1, d3owel3, d3owem_, d3owen1, d3owen3, d3oweo_, d3owep1, d3owep3
        automated match to d1d5zc2
        mutant
      6. 2503828Domain d3owel2: 3owe L:116-233 [200176]
        Other proteins in same PDB: d3owea_, d3oweb1, d3oweb3, d3owec_, d3owed1, d3owed3, d3owee_, d3owef1, d3owef3, d3oweg_, d3oweh1, d3oweh3, d3owei_, d3owej1, d3owej3, d3owek_, d3owel1, d3owel3, d3owem_, d3owen1, d3owen3, d3oweo_, d3owep1, d3owep3
        automated match to d1d5zc2
        mutant
      7. 2503829Domain d3owen2: 3owe N:116-233 [200178]
        Other proteins in same PDB: d3owea_, d3oweb1, d3oweb3, d3owec_, d3owed1, d3owed3, d3owee_, d3owef1, d3owef3, d3oweg_, d3oweh1, d3oweh3, d3owei_, d3owej1, d3owej3, d3owek_, d3owel1, d3owel3, d3owem_, d3owen1, d3owen3, d3oweo_, d3owep1, d3owep3
        automated match to d1d5zc2
        mutant
      8. 2503830Domain d3owep2: 3owe P:116-233 [200180]
        Other proteins in same PDB: d3owea_, d3oweb1, d3oweb3, d3owec_, d3owed1, d3owed3, d3owee_, d3owef1, d3owef3, d3oweg_, d3oweh1, d3oweh3, d3owei_, d3owej1, d3owej3, d3owek_, d3owel1, d3owel3, d3owem_, d3owen1, d3owen3, d3oweo_, d3owep1, d3owep3
        automated match to d1d5zc2
        mutant
    6. Domain for 4udu:
    7. Domain for 5fka:
    8. Domain for 5i4d:
  2. 2503833Staphylococcus aureus [TaxId:158878] [224923] (3 PDB entries)
    1. Domains for 2rdh:
      1. 2503834Domain d2rdhb2: 2rdh B:94-196 [231258]
        Other proteins in same PDB: d2rdha1, d2rdhb1, d2rdhc1, d2rdhd1
        automated match to d3o13a2
        complexed with na, po4
      2. 2503835Domain d2rdhc2: 2rdh C:94-196 [231260]
        Other proteins in same PDB: d2rdha1, d2rdhb1, d2rdhc1, d2rdhd1
        automated match to d3o13a2
        complexed with na, po4
      3. 2503836Domain d2rdhd2: 2rdh D:94-196 [231262]
        Other proteins in same PDB: d2rdha1, d2rdhb1, d2rdhc1, d2rdhd1
        automated match to d3o13a2
        complexed with na, po4
    2. Domain for 3o13:
    3. Domains for 4zys:
      1. 2503838Domain d4zysa2: 4zys A:126-226 [310132]
        Other proteins in same PDB: d4zysa1, d4zysb1
        automated match to d4o1na2
        complexed with cl
      2. 2503839Domain d4zysb2: 4zys B:126-226 [310134]
        Other proteins in same PDB: d4zysa1, d4zysb1
        automated match to d4o1na2
        complexed with cl
  3. 2503840Staphylococcus aureus [TaxId:426430] [267924] (2 PDB entries)
    1. Domain for 4dxg:
    2. Domain for 5i4d:
  4. 2503843Staphylococcus aureus [TaxId:93061] [226096] (6 PDB entries)
    1. Domains for 3r2t:
      1. 2503852Domain d3r2ta2: 3r2t A:129-232 [215558]
        Other proteins in same PDB: d3r2ta1, d3r2tb1
        automated match to d2z8la2
        complexed with so4
      2. 2503853Domain d3r2tb2: 3r2t B:129-232 [215560]
        Other proteins in same PDB: d3r2ta1, d3r2tb1
        automated match to d2z8la2
        complexed with so4
    2. Domains for 3ury:
      1. 2503848Domain d3urya2: 3ury A:208-308 [265539]
        Other proteins in same PDB: d3urya1, d3uryb1
        automated match to d4rcob2
        complexed with cl
      2. 2503849Domain d3uryb2: 3ury B:208-308 [265541]
        Other proteins in same PDB: d3urya1, d3uryb1
        automated match to d4rcob2
        complexed with cl
    3. Domains for 4dxf:
      1. 2503844Domain d4dxfa2: 4dxf A:100-200 [266161]
        Other proteins in same PDB: d4dxfa1, d4dxfb1
        automated match to d4rcob2
        complexed with cl, gol
      2. 2503845Domain d4dxfb2: 4dxf B:100-200 [266163]
        Other proteins in same PDB: d4dxfa1, d4dxfb1
        automated match to d4rcob2
        complexed with cl, gol
    4. Domains for 4o1n:
      1. 2503854Domain d4o1na2: 4o1n A:102-202 [268437]
        Other proteins in same PDB: d4o1na1, d4o1nb1, d4o1nc1, d4o1nd1, d4o1ne1, d4o1nf1
        automated match to d2z8la2
        complexed with gol
      2. 2503855Domain d4o1nb2: 4o1n B:102-202 [268439]
        Other proteins in same PDB: d4o1na1, d4o1nb1, d4o1nc1, d4o1nd1, d4o1ne1, d4o1nf1
        automated match to d2z8la2
        complexed with gol
      3. 2503856Domain d4o1nc2: 4o1n C:102-202 [268432]
        Other proteins in same PDB: d4o1na1, d4o1nb1, d4o1nc1, d4o1nd1, d4o1ne1, d4o1nf1
        automated match to d2z8la2
        complexed with gol
      4. 2503857Domain d4o1nd2: 4o1n D:102-202 [268434]
        Other proteins in same PDB: d4o1na1, d4o1nb1, d4o1nc1, d4o1nd1, d4o1ne1, d4o1nf1
        automated match to d2z8la2
        complexed with gol
      5. 2503858Domain d4o1ne2: 4o1n E:102-202 [268441]
        Other proteins in same PDB: d4o1na1, d4o1nb1, d4o1nc1, d4o1nd1, d4o1ne1, d4o1nf1
        automated match to d2z8la2
        complexed with gol
      6. 2503859Domain d4o1nf2: 4o1n F:102-202 [268444]
        Other proteins in same PDB: d4o1na1, d4o1nb1, d4o1nc1, d4o1nd1, d4o1ne1, d4o1nf1
        automated match to d2z8la2
        complexed with gol
    5. Domains for 4rco:
      1. 2503846Domain d4rcoa2: 4rco A:208-308 [263856]
        Other proteins in same PDB: d4rcoa1, d4rcob1
        automated match to d4rcob2
        complexed with cl, fuc, gal, ndg, sia
      2. 2503847Domain d4rcob2: 4rco B:208-308 [260018]
        Other proteins in same PDB: d4rcoa1, d4rcob1
        automated match to d2rdga2
        complexed with cl, fuc, gal, ndg, sia
    6. Domains for 5d3d:
      1. 2503850Domain d5d3da2: 5d3d A:226-326 [276229]
        Other proteins in same PDB: d5d3da1, d5d3db1, d5d3db3
        automated match to d4rcob2
        complexed with cl, gol, na, scn
      2. 2503851Domain d5d3db2: 5d3d B:226-326 [276227]
        Other proteins in same PDB: d5d3da1, d5d3db1, d5d3db3
        automated match to d4rcob2
        complexed with cl, gol, na, scn
  5. 2503860Staphylococcus aureus [TaxId:93062] [226095] (2 PDB entries)
    1. Domain for 3r2i:
    2. Domains for 4rh6:
      1. 2503862Domain d4rh6a2: 4rh6 A:126-226 [309425]
        Other proteins in same PDB: d4rh6a1, d4rh6b1, d4rh6c1
        automated match to d4o1na2
        complexed with cl
      2. 2503863Domain d4rh6b2: 4rh6 B:126-226 [309427]
        Other proteins in same PDB: d4rh6a1, d4rh6b1, d4rh6c1
        automated match to d4o1na2
        complexed with cl
      3. 2503864Domain d4rh6c2: 4rh6 C:126-226 [309429]
        Other proteins in same PDB: d4rh6a1, d4rh6b1, d4rh6c1
        automated match to d4o1na2
        complexed with cl

More info for Protein automated matches from d.15.6.0: automated matches

Timeline for Protein automated matches from d.15.6.0: automated matches: