Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2107739Fold c.32: Tubulin nucleotide-binding domain-like [52489] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
  4. 2107740Superfamily c.32.1: Tubulin nucleotide-binding domain-like [52490] (2 families) (S)
    automatically mapped to Pfam PF00091
  5. 2107977Family c.32.1.0: automated matches [227136] (1 protein)
    not a true family
  6. 2107978Protein automated matches [226838] (4 species)
    not a true protein

Species:

  1. 2107979Bacillus subtilis [TaxId:1423] [225338] (3 PDB entries)
    1. Domain for 2vam:
    2. Domain for 2vxy:
    3. Domains for 4u39:
      1. 2107982Domain d4u39a1: 4u39 A:13-202 [270646]
        Other proteins in same PDB: d4u39a2, d4u39b2, d4u39c2, d4u39d2, d4u39e2, d4u39f2, d4u39g2, d4u39i2
        automated match to d2vxya1
        complexed with po4
      2. 2107983Domain d4u39b1: 4u39 B:13-203 [270625]
        Other proteins in same PDB: d4u39a2, d4u39b2, d4u39c2, d4u39d2, d4u39e2, d4u39f2, d4u39g2, d4u39i2
        automated match to d2vxya1
        complexed with po4
      3. 2107984Domain d4u39c1: 4u39 C:13-202 [270644]
        Other proteins in same PDB: d4u39a2, d4u39b2, d4u39c2, d4u39d2, d4u39e2, d4u39f2, d4u39g2, d4u39i2
        automated match to d2vxya1
        complexed with po4
      4. 2107985Domain d4u39d1: 4u39 D:13-201 [270642]
        Other proteins in same PDB: d4u39a2, d4u39b2, d4u39c2, d4u39d2, d4u39e2, d4u39f2, d4u39g2, d4u39i2
        automated match to d2vxya1
        complexed with po4
      5. 2107986Domain d4u39e1: 4u39 E:13-203 [270635]
        Other proteins in same PDB: d4u39a2, d4u39b2, d4u39c2, d4u39d2, d4u39e2, d4u39f2, d4u39g2, d4u39i2
        automated match to d2vxya1
        complexed with po4
      6. 2107987Domain d4u39f1: 4u39 F:13-202 [270627]
        Other proteins in same PDB: d4u39a2, d4u39b2, d4u39c2, d4u39d2, d4u39e2, d4u39f2, d4u39g2, d4u39i2
        automated match to d2vxya1
        complexed with po4
      7. 2107988Domain d4u39g1: 4u39 G:14-201 [270648]
        Other proteins in same PDB: d4u39a2, d4u39b2, d4u39c2, d4u39d2, d4u39e2, d4u39f2, d4u39g2, d4u39i2
        automated match to d2vxya1
        complexed with po4
      8. 2107989Domain d4u39h1: 4u39 H:13-201 [270629]
        Other proteins in same PDB: d4u39a2, d4u39b2, d4u39c2, d4u39d2, d4u39e2, d4u39f2, d4u39g2, d4u39i2
        automated match to d2vxya1
        complexed with po4
      9. 2107990Domain d4u39i1: 4u39 I:13-201 [270650]
        Other proteins in same PDB: d4u39a2, d4u39b2, d4u39c2, d4u39d2, d4u39e2, d4u39f2, d4u39g2, d4u39i2
        automated match to d2vxya1
        complexed with po4
  2. 2107991Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [259118] (1 PDB entry)
  3. 2107993Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [224885] (2 PDB entries)
    1. Domains for 4ffb:
      1. 2107994Domain d4ffba1: 4ffb A:1-246 [221161]
        Other proteins in same PDB: d4ffba2, d4ffbb2
        automated match to d1jffa1
        complexed with gtp, mg
      2. 2107995Domain d4ffbb1: 4ffb B:1-243 [221163]
        Other proteins in same PDB: d4ffba2, d4ffbb2
        automated match to d1tubb1
        complexed with gtp, mg
    2. Domain for 4u3j:
  4. 2107997Human (Homo sapiens) [TaxId:9606] [224982] (3 PDB entries)
    1. Domain for 1z5v:
    2. Domain for 1z5w:
    3. Domains for 3cb2:
      1. 2107998Domain d3cb2a1: 3cb2 A:2-246 [208844]
        Other proteins in same PDB: d3cb2a2, d3cb2b2
        automated match to d1tubb1
        complexed with gdp
      2. 2107999Domain d3cb2b1: 3cb2 B:3-246 [208846]
        Other proteins in same PDB: d3cb2a2, d3cb2b2
        automated match to d1tubb1
        complexed with gdp

More info for Protein automated matches from c.32.1.0: automated matches

Timeline for Protein automated matches from c.32.1.0: automated matches: