Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1361112Fold c.32: Tubulin nucleotide-binding domain-like [52489] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
  4. 1361113Superfamily c.32.1: Tubulin nucleotide-binding domain-like [52490] (2 families) (S)
    automatically mapped to Pfam PF00091
  5. 1361114Family c.32.1.1: Tubulin, GTPase domain [52491] (4 proteins)
  6. 1361222Protein automated matches [226837] (3 species)
    not a true protein

Species:

  1. 1361223Cow (Bos taurus) [TaxId:9913] [226564] (11 PDB entries)
    1. Domains for 4i4t:
      1. 1361228Domain d4i4ta1: 4i4t A:1-245 [222905]
        Other proteins in same PDB: d4i4ta2, d4i4tb2, d4i4tc2, d4i4td2, d4i4te_
        automated match to d1tuba1
        complexed with acp, ca, cl, gdp, gol, gtp, mes, mg, tyr, zpn
      2. 1361229Domain d4i4tb1: 4i4t B:1-245 [222907]
        Other proteins in same PDB: d4i4ta2, d4i4tb2, d4i4tc2, d4i4td2, d4i4te_
        automated match to d1tubb1
        complexed with acp, ca, cl, gdp, gol, gtp, mes, mg, tyr, zpn
      3. 1361230Domain d4i4tc1: 4i4t C:1-245 [222909]
        Other proteins in same PDB: d4i4ta2, d4i4tb2, d4i4tc2, d4i4td2, d4i4te_
        automated match to d1tuba1
        complexed with acp, ca, cl, gdp, gol, gtp, mes, mg, tyr, zpn
      4. 1361231Domain d4i4td1: 4i4t D:1-245 [222911]
        Other proteins in same PDB: d4i4ta2, d4i4tb2, d4i4tc2, d4i4td2, d4i4te_
        automated match to d1tubb1
        complexed with acp, ca, cl, gdp, gol, gtp, mes, mg, tyr, zpn
    2. Domains for 4i50:
      1. 1361236Domain d4i50a1: 4i50 A:1-245 [222914]
        Other proteins in same PDB: d4i50a2, d4i50b2, d4i50c2, d4i50d2, d4i50e_
        automated match to d1z2ba1
        complexed with acp, ca, cl, ep, gdp, gol, gtp, mes, mg
      2. 1361237Domain d4i50b1: 4i50 B:2-245 [222916]
        Other proteins in same PDB: d4i50a2, d4i50b2, d4i50c2, d4i50d2, d4i50e_
        automated match to d1tubb1
        complexed with acp, ca, cl, ep, gdp, gol, gtp, mes, mg
      3. 1361238Domain d4i50c1: 4i50 C:1-245 [222918]
        Other proteins in same PDB: d4i50a2, d4i50b2, d4i50c2, d4i50d2, d4i50e_
        automated match to d1z2ba1
        complexed with acp, ca, cl, ep, gdp, gol, gtp, mes, mg
      4. 1361239Domain d4i50d1: 4i50 D:2-245 [222920]
        Other proteins in same PDB: d4i50a2, d4i50b2, d4i50c2, d4i50d2, d4i50e_
        automated match to d1tubb1
        complexed with acp, ca, cl, ep, gdp, gol, gtp, mes, mg
    3. Domains for 4i55:
      1. 1361232Domain d4i55a1: 4i55 A:1-245 [234807]
        Other proteins in same PDB: d4i55a2, d4i55b2, d4i55c2, d4i55d2, d4i55e_
        automated match to d4i4ta1
        complexed with acp, ca, cl, gdp, gtp, mes, mg
      2. 1361233Domain d4i55b1: 4i55 B:1-245 [222923]
        Other proteins in same PDB: d4i55a2, d4i55b2, d4i55c2, d4i55d2, d4i55e_
        automated match to d1tubb1
        complexed with acp, ca, cl, gdp, gtp, mes, mg
      3. 1361234Domain d4i55c1: 4i55 C:1-245 [222925]
        Other proteins in same PDB: d4i55a2, d4i55b2, d4i55c2, d4i55d2, d4i55e_
        automated match to d1tuba1
        complexed with acp, ca, cl, gdp, gtp, mes, mg
      4. 1361235Domain d4i55d1: 4i55 D:2-245 [222927]
        Other proteins in same PDB: d4i55a2, d4i55b2, d4i55c2, d4i55d2, d4i55e_
        automated match to d1tubb1
        complexed with acp, ca, cl, gdp, gtp, mes, mg
    4. Domains for 4ihj:
      1. 1361224Domain d4ihja1: 4ihj A:1-245 [202610]
        Other proteins in same PDB: d4ihja2, d4ihjb2, d4ihjc2, d4ihjd2, d4ihje_
        automated match to d1tuba1
        complexed with adp, ca, cl, gdp, gol, gtp, mes, mg
      2. 1361225Domain d4ihjb1: 4ihj B:1-245 [202612]
        Other proteins in same PDB: d4ihja2, d4ihjb2, d4ihjc2, d4ihjd2, d4ihje_
        automated match to d1tubb1
        complexed with adp, ca, cl, gdp, gol, gtp, mes, mg
      3. 1361226Domain d4ihjc1: 4ihj C:1-245 [202614]
        Other proteins in same PDB: d4ihja2, d4ihjb2, d4ihjc2, d4ihjd2, d4ihje_
        automated match to d1tuba1
        complexed with adp, ca, cl, gdp, gol, gtp, mes, mg
      4. 1361227Domain d4ihjd1: 4ihj D:2-245 [202616]
        Other proteins in same PDB: d4ihja2, d4ihjb2, d4ihjc2, d4ihjd2, d4ihje_
        automated match to d1tubb1
        complexed with adp, ca, cl, gdp, gol, gtp, mes, mg
    5. Domains for 4iij:
      1. 1361248Domain d4iija1: 4iij A:1-245 [223190]
        Other proteins in same PDB: d4iija2, d4iijb2, d4iijc2, d4iijd2, d4iije_
        automated match to d1z2ba1
        complexed with ca, cl, gdp, gtp, mes, mg
      2. 1361249Domain d4iijb1: 4iij B:1-245 [223192]
        Other proteins in same PDB: d4iija2, d4iijb2, d4iijc2, d4iijd2, d4iije_
        automated match to d1tubb1
        complexed with ca, cl, gdp, gtp, mes, mg
      3. 1361250Domain d4iijc1: 4iij C:1-245 [223194]
        Other proteins in same PDB: d4iija2, d4iijb2, d4iijc2, d4iijd2, d4iije_
        automated match to d1z2ba1
        complexed with ca, cl, gdp, gtp, mes, mg
      4. 1361251Domain d4iijd1: 4iij D:2-245 [223196]
        Other proteins in same PDB: d4iija2, d4iijb2, d4iijc2, d4iijd2, d4iije_
        automated match to d1tubb1
        complexed with ca, cl, gdp, gtp, mes, mg
    6. Domains for 4o2a:
      1. 1361264Domain d4o2aa1: 4o2a A:1-245 [237349]
        Other proteins in same PDB: d4o2aa2, d4o2ab2, d4o2ac2, d4o2ad2, d4o2ae_
        automated match to d3ryca1
        complexed with 2rr, adp, ca, cl, gdp, gol, gtp, imd, mes, mg
      2. 1361265Domain d4o2ab1: 4o2a B:1-245 [237354]
        Other proteins in same PDB: d4o2aa2, d4o2ab2, d4o2ac2, d4o2ad2, d4o2ae_
        automated match to d4i4td1
        complexed with 2rr, adp, ca, cl, gdp, gol, gtp, imd, mes, mg
      3. 1361266Domain d4o2ac1: 4o2a C:1-245 [237347]
        Other proteins in same PDB: d4o2aa2, d4o2ab2, d4o2ac2, d4o2ad2, d4o2ae_
        automated match to d3ryha1
        complexed with 2rr, adp, ca, cl, gdp, gol, gtp, imd, mes, mg
      4. 1361267Domain d4o2ad1: 4o2a D:1-245 [237356]
        Other proteins in same PDB: d4o2aa2, d4o2ab2, d4o2ac2, d4o2ad2, d4o2ae_
        automated match to d4i4td1
        complexed with 2rr, adp, ca, cl, gdp, gol, gtp, imd, mes, mg
    7. Domains for 4o2b:
      1. 1361252Domain d4o2ba1: 4o2b A:1-245 [237343]
        Other proteins in same PDB: d4o2ba2, d4o2bb2, d4o2bc2, d4o2bd2, d4o2be_
        automated match to d3rycc1
        complexed with acp, ca, gdp, gol, gtp, imd, loc, mes, mg, peg
      2. 1361253Domain d4o2bb1: 4o2b B:1-245 [237346]
        Other proteins in same PDB: d4o2ba2, d4o2bb2, d4o2bc2, d4o2bd2, d4o2be_
        automated match to d4i4td1
        complexed with acp, ca, gdp, gol, gtp, imd, loc, mes, mg, peg
      3. 1361254Domain d4o2bc1: 4o2b C:1-245 [237342]
        Other proteins in same PDB: d4o2ba2, d4o2bb2, d4o2bc2, d4o2bd2, d4o2be_
        automated match to d3ryha1
        complexed with acp, ca, gdp, gol, gtp, imd, loc, mes, mg, peg
      4. 1361255Domain d4o2bd1: 4o2b D:1-245 [237352]
        Other proteins in same PDB: d4o2ba2, d4o2bb2, d4o2bc2, d4o2bd2, d4o2be_
        automated match to d4i4td1
        complexed with acp, ca, gdp, gol, gtp, imd, loc, mes, mg, peg
    8. Domains for 4o4h:
      1. 1361240Domain d4o4ha1: 4o4h A:1-245 [237359]
        Other proteins in same PDB: d4o4ha2, d4o4hb2, d4o4hc2, d4o4hd2, d4o4he_
        automated match to d3rycc1
        complexed with acp, ca, gdp, gol, gtp, llm, mg
      2. 1361241Domain d4o4hb1: 4o4h B:1-245 [237368]
        Other proteins in same PDB: d4o4ha2, d4o4hb2, d4o4hc2, d4o4hd2, d4o4he_
        automated match to d4i4td1
        complexed with acp, ca, gdp, gol, gtp, llm, mg
      3. 1361242Domain d4o4hc1: 4o4h C:1-245 [237364]
        Other proteins in same PDB: d4o4ha2, d4o4hb2, d4o4hc2, d4o4hd2, d4o4he_
        automated match to d3ryha1
        complexed with acp, ca, gdp, gol, gtp, llm, mg
      4. 1361243Domain d4o4hd1: 4o4h D:1-245 [237362]
        Other proteins in same PDB: d4o4ha2, d4o4hb2, d4o4hc2, d4o4hd2, d4o4he_
        automated match to d4i4td1
        complexed with acp, ca, gdp, gol, gtp, llm, mg
    9. Domains for 4o4i:
      1. 1361260Domain d4o4ia1: 4o4i A:1-245 [237696]
        Other proteins in same PDB: d4o4ia2, d4o4ib2, d4o4ic2, d4o4id2, d4o4ie_
        automated match to d3ryca1
        complexed with acp, ca, ep, gdp, gtp, llm, mes, mg
      2. 1361261Domain d4o4ib1: 4o4i B:1-245 [237694]
        Other proteins in same PDB: d4o4ia2, d4o4ib2, d4o4ic2, d4o4id2, d4o4ie_
        automated match to d4i4td1
        complexed with acp, ca, ep, gdp, gtp, llm, mes, mg
      3. 1361262Domain d4o4ic1: 4o4i C:1-245 [237700]
        Other proteins in same PDB: d4o4ia2, d4o4ib2, d4o4ic2, d4o4id2, d4o4ie_
        automated match to d3ryha1
        complexed with acp, ca, ep, gdp, gtp, llm, mes, mg
      4. 1361263Domain d4o4id1: 4o4i D:1-245 [237698]
        Other proteins in same PDB: d4o4ia2, d4o4ib2, d4o4ic2, d4o4id2, d4o4ie_
        automated match to d4i4td1
        complexed with acp, ca, ep, gdp, gtp, llm, mes, mg
    10. Domains for 4o4j:
      1. 1361256Domain d4o4ja1: 4o4j A:1-245 [238043]
        Other proteins in same PDB: d4o4ja2, d4o4jb2, d4o4jc2, d4o4jd2, d4o4je_
        automated match to d3rycc1
        complexed with acp, ca, gdp, gol, gtp, mg, pou
      2. 1361257Domain d4o4jb1: 4o4j B:1-245 [238046]
        Other proteins in same PDB: d4o4ja2, d4o4jb2, d4o4jc2, d4o4jd2, d4o4je_
        automated match to d4i4td1
        complexed with acp, ca, gdp, gol, gtp, mg, pou
      3. 1361258Domain d4o4jc1: 4o4j C:1-245 [238048]
        Other proteins in same PDB: d4o4ja2, d4o4jb2, d4o4jc2, d4o4jd2, d4o4je_
        automated match to d3ryha1
        complexed with acp, ca, gdp, gol, gtp, mg, pou
      4. 1361259Domain d4o4jd1: 4o4j D:1-245 [238050]
        Other proteins in same PDB: d4o4ja2, d4o4jb2, d4o4jc2, d4o4jd2, d4o4je_
        automated match to d4i4td1
        complexed with acp, ca, gdp, gol, gtp, mg, pou
    11. Domains for 4o4l:
      1. 1361244Domain d4o4la1: 4o4l A:1-245 [238035]
        Other proteins in same PDB: d4o4la2, d4o4lb2, d4o4lc2, d4o4ld2, d4o4le_
        automated match to d3rycc1
        complexed with ca, ep, gdp, gtp, mes, mg, pou
      2. 1361245Domain d4o4lb1: 4o4l B:1-245 [238037]
        Other proteins in same PDB: d4o4la2, d4o4lb2, d4o4lc2, d4o4ld2, d4o4le_
        automated match to d4i4td1
        complexed with ca, ep, gdp, gtp, mes, mg, pou
      3. 1361246Domain d4o4lc1: 4o4l C:1-245 [238039]
        Other proteins in same PDB: d4o4la2, d4o4lb2, d4o4lc2, d4o4ld2, d4o4le_
        automated match to d3ryha1
        complexed with ca, ep, gdp, gtp, mes, mg, pou
      4. 1361247Domain d4o4ld1: 4o4l D:1-245 [238041]
        Other proteins in same PDB: d4o4la2, d4o4lb2, d4o4lc2, d4o4ld2, d4o4le_
        automated match to d4i4td1
        complexed with ca, ep, gdp, gtp, mes, mg, pou
  2. 1361268Sheep (Ovis aries) [TaxId:9940] [224884] (7 PDB entries)
    1. Domains for 3ryc:
      1. 1361273Domain d3ryca1: 3ryc A:1-245 [200537]
        Other proteins in same PDB: d3ryca2, d3rycb2, d3rycc2, d3rycd2, d3ryce_
        automated match to d1z2ba1
        complexed with gdp, gtp, mg, so4
      2. 1361274Domain d3rycb1: 3ryc B:1-245 [200539]
        Other proteins in same PDB: d3ryca2, d3rycb2, d3rycc2, d3rycd2, d3ryce_
        automated match to d1z2bb1
        complexed with gdp, gtp, mg, so4
      3. 1361275Domain d3rycc1: 3ryc C:1-245 [200541]
        Other proteins in same PDB: d3ryca2, d3rycb2, d3rycc2, d3rycd2, d3ryce_
        automated match to d1z2ba1
        complexed with gdp, gtp, mg, so4
      4. 1361276Domain d3rycd1: 3ryc D:1-245 [200543]
        Other proteins in same PDB: d3ryca2, d3rycb2, d3rycc2, d3rycd2, d3ryce_
        automated match to d1z2bb1
        complexed with gdp, gtp, mg, so4
    2. Domains for 3ryf:
      1. 1361281Domain d3ryfa1: 3ryf A:1-245 [200545]
        Other proteins in same PDB: d3ryfa2, d3ryfb2, d3ryfc2, d3ryfd2, d3ryfe_
        automated match to d1z2ba1
        complexed with gtp, mg, so4
      2. 1361282Domain d3ryfb1: 3ryf B:1-245 [200547]
        Other proteins in same PDB: d3ryfa2, d3ryfb2, d3ryfc2, d3ryfd2, d3ryfe_
        automated match to d1z2bb1
        complexed with gtp, mg, so4
      3. 1361283Domain d3ryfc1: 3ryf C:1-245 [200549]
        Other proteins in same PDB: d3ryfa2, d3ryfb2, d3ryfc2, d3ryfd2, d3ryfe_
        automated match to d1z2ba1
        complexed with gtp, mg, so4
      4. 1361284Domain d3ryfd1: 3ryf D:1-245 [200551]
        Other proteins in same PDB: d3ryfa2, d3ryfb2, d3ryfc2, d3ryfd2, d3ryfe_
        automated match to d1z2bb1
        complexed with gtp, mg, so4
    3. Domains for 3ryh:
      1. 1361287Domain d3ryha1: 3ryh A:1-245 [200553]
        Other proteins in same PDB: d3ryha2, d3ryhb2, d3ryhc2, d3ryhd2, d3ryhe_
        automated match to d1z2ba1
        complexed with g2p, gtp, mg, so4
      2. 1361288Domain d3ryhb1: 3ryh B:1-245 [200555]
        Other proteins in same PDB: d3ryha2, d3ryhb2, d3ryhc2, d3ryhd2, d3ryhe_
        automated match to d1z2bb1
        complexed with g2p, gtp, mg, so4
      3. 1361289Domain d3ryhc1: 3ryh C:1-245 [200557]
        Other proteins in same PDB: d3ryha2, d3ryhb2, d3ryhc2, d3ryhd2, d3ryhe_
        automated match to d1z2ba1
        complexed with g2p, gtp, mg, so4
      4. 1361290Domain d3ryhd1: 3ryh D:1-245 [200559]
        Other proteins in same PDB: d3ryha2, d3ryhb2, d3ryhc2, d3ryhd2, d3ryhe_
        automated match to d1z2bb1
        complexed with g2p, gtp, mg, so4
    4. Domains for 3ryi:
      1. 1361277Domain d3ryia1: 3ryi A:1-245 [200561]
        Other proteins in same PDB: d3ryia2, d3ryib2, d3ryic2, d3ryid2, d3ryie_
        automated match to d1z2ba1
        complexed with gdp, gtp, mg, so4
      2. 1361278Domain d3ryib1: 3ryi B:1-245 [200563]
        Other proteins in same PDB: d3ryia2, d3ryib2, d3ryic2, d3ryid2, d3ryie_
        automated match to d1z2bb1
        complexed with gdp, gtp, mg, so4
      3. 1361279Domain d3ryic1: 3ryi C:1-245 [200565]
        Other proteins in same PDB: d3ryia2, d3ryib2, d3ryic2, d3ryid2, d3ryie_
        automated match to d1z2ba1
        complexed with gdp, gtp, mg, so4
      4. 1361280Domain d3ryid1: 3ryi D:1-245 [200567]
        Other proteins in same PDB: d3ryia2, d3ryib2, d3ryic2, d3ryid2, d3ryie_
        automated match to d1z2bb1
        complexed with gdp, gtp, mg, so4
    5. Domains for 3ut5:
      1. 1361291Domain d3ut5a1: 3ut5 A:1-245 [201111]
        Other proteins in same PDB: d3ut5a2, d3ut5b2, d3ut5c2, d3ut5d2, d3ut5e_
        automated match to d1z2ba1
        complexed with gdp, gtp, loc, mg, so4
      2. 1361292Domain d3ut5b1: 3ut5 B:1-245 [201113]
        Other proteins in same PDB: d3ut5a2, d3ut5b2, d3ut5c2, d3ut5d2, d3ut5e_
        automated match to d1z2bb1
        complexed with gdp, gtp, loc, mg, so4
      3. 1361293Domain d3ut5c1: 3ut5 C:1-245 [201115]
        Other proteins in same PDB: d3ut5a2, d3ut5b2, d3ut5c2, d3ut5d2, d3ut5e_
        automated match to d1z2ba1
        complexed with gdp, gtp, loc, mg, so4
      4. 1361294Domain d3ut5d1: 3ut5 D:1-245 [201117]
        Other proteins in same PDB: d3ut5a2, d3ut5b2, d3ut5c2, d3ut5d2, d3ut5e_
        automated match to d1z2bb1
        complexed with gdp, gtp, loc, mg, so4
    6. Domains for 4drx:
      1. 1361269Domain d4drxa1: 4drx A:2-245 [219979]
        Other proteins in same PDB: d4drxa2, d4drxb2, d4drxc2, d4drxd2, d4drxe_, d4drxf_
        automated match to d1tuba1
        complexed with gtp, mg
      2. 1361270Domain d4drxb1: 4drx B:1-245 [219981]
        Other proteins in same PDB: d4drxa2, d4drxb2, d4drxc2, d4drxd2, d4drxe_, d4drxf_
        automated match to d1z2bb1
        complexed with gtp, mg
      3. 1361271Domain d4drxc1: 4drx C:2-245 [219983]
        Other proteins in same PDB: d4drxa2, d4drxb2, d4drxc2, d4drxd2, d4drxe_, d4drxf_
        automated match to d1tuba1
        complexed with gtp, mg
      4. 1361272Domain d4drxd1: 4drx D:1-245 [219985]
        Other proteins in same PDB: d4drxa2, d4drxb2, d4drxc2, d4drxd2, d4drxe_, d4drxf_
        automated match to d1z2bb1
        complexed with gtp, mg
    7. Domains for 4f6r:
      1. 1361285Domain d4f6ra1: 4f6r A:1-245 [202007]
        Other proteins in same PDB: d4f6ra2, d4f6rb2, d4f6rd_
        automated match to d1z2ba1
        complexed with gdp, gtp, mes, mg, so4
      2. 1361286Domain d4f6rb1: 4f6r B:1-245 [202009]
        Other proteins in same PDB: d4f6ra2, d4f6rb2, d4f6rd_
        automated match to d1z2bb1
        complexed with gdp, gtp, mes, mg, so4
  3. 1361295Staphylococcus epidermidis [TaxId:176279] [227787] (1 PDB entry)

More info for Protein automated matches from c.32.1.1: Tubulin, GTPase domain

Timeline for Protein automated matches from c.32.1.1: Tubulin, GTPase domain: