Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2409884Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2411049Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2411388Family b.121.6.0: automated matches [227135] (1 protein)
    not a true family
  6. 2411389Protein automated matches [226836] (6 species)
    not a true protein

Species:

  1. 2411390Bk polyomavirus [TaxId:10629] [228808] (2 PDB entries)
    1. Domains for 4mj0:
      1. 2411391Domain d4mj0a_: 4mj0 A: [235643]
        automated match to d4mj0b_
        complexed with bgc, cl, gal, gol, sia
      2. 2411392Domain d4mj0b_: 4mj0 B: [228809]
        automated match to d1vpsb_
        complexed with bgc, cl, gal, gol, sia
      3. 2411393Domain d4mj0c_: 4mj0 C: [235646]
        automated match to d4mj0b_
        complexed with bgc, cl, gal, gol, sia
      4. 2411394Domain d4mj0d_: 4mj0 D: [235644]
        automated match to d4mj0b_
        complexed with bgc, cl, gal, gol, sia
      5. 2411395Domain d4mj0e_: 4mj0 E: [235645]
        automated match to d4mj0b_
        complexed with bgc, cl, gal, gol, sia
    2. Domains for 4mj1:
      1. 2411396Domain d4mj1a_: 4mj1 A: [235649]
        automated match to d4mj0b_
        complexed with cl, gol
      2. 2411397Domain d4mj1b_: 4mj1 B: [235647]
        automated match to d4mj0b_
        complexed with cl, gol
      3. 2411398Domain d4mj1c_: 4mj1 C: [235648]
        automated match to d4mj0b_
        complexed with cl, gol
      4. 2411399Domain d4mj1d_: 4mj1 D: [235651]
        automated match to d4mj0b_
        complexed with cl, gol
      5. 2411400Domain d4mj1e_: 4mj1 E: [235650]
        automated match to d4mj0b_
        complexed with cl, gol
  2. 2411401Jc polyomavirus [TaxId:10632] [224872] (5 PDB entries)
    1. Domains for 3nxd:
      1. 2411412Domain d3nxda_: 3nxd A: [214075]
        automated match to d1vpsa_
        complexed with edo, gol
      2. 2411413Domain d3nxdb_: 3nxd B: [214076]
        automated match to d1vpsa_
        complexed with edo, gol
      3. 2411414Domain d3nxdc_: 3nxd C: [214077]
        automated match to d1vpsa_
        complexed with edo, gol
      4. 2411415Domain d3nxdd_: 3nxd D: [214078]
        automated match to d1vpsa_
        complexed with edo, gol
      5. 2411416Domain d3nxde_: 3nxd E: [214079]
        automated match to d1vpsa_
        complexed with edo, gol
    2. Domains for 3nxg:
      1. 2411407Domain d3nxga_: 3nxg A: [214080]
        automated match to d1vpsa_
        complexed with edo, gol
      2. 2411408Domain d3nxgb_: 3nxg B: [214081]
        automated match to d1vpsa_
        complexed with edo, gol
      3. 2411409Domain d3nxgc_: 3nxg C: [214082]
        automated match to d1vpsa_
        complexed with edo, gol
      4. 2411410Domain d3nxgd_: 3nxg D: [214083]
        automated match to d1vpsa_
        complexed with edo, gol
      5. 2411411Domain d3nxge_: 3nxg E: [214084]
        automated match to d1vpsa_
        complexed with edo, gol
    3. Domains for 4jcd:
      1. 2411417Domain d4jcda_: 4jcd A: [223679]
        automated match to d1vpsa_
        complexed with edo, gol
      2. 2411418Domain d4jcdb_: 4jcd B: [223680]
        automated match to d1vpsa_
        complexed with edo, gol
      3. 2411419Domain d4jcdc_: 4jcd C: [223681]
        automated match to d1vpsa_
        complexed with edo, gol
      4. 2411420Domain d4jcdd_: 4jcd D: [223682]
        automated match to d1vpsa_
        complexed with edo, gol
      5. 2411421Domain d4jcde_: 4jcd E: [223683]
        automated match to d1vpsa_
        complexed with edo, gol
    4. Domains for 4jce:
      1. 2411402Domain d4jcea_: 4jce A: [223684]
        automated match to d1vpsa_
        complexed with edo, gol
      2. 2411403Domain d4jceb_: 4jce B: [223685]
        automated match to d1vpsa_
        complexed with edo, gol
      3. 2411404Domain d4jcec_: 4jce C: [223686]
        automated match to d1vpsa_
        complexed with edo, gol
      4. 2411405Domain d4jced_: 4jce D: [223687]
        automated match to d1vpsa_
        complexed with edo, gol
      5. 2411406Domain d4jcee_: 4jce E: [223688]
        automated match to d1vpsa_
        complexed with edo, gol
    5. Domains for 4jcf:
      1. 2411422Domain d4jcfa_: 4jcf A: [223689]
        automated match to d1vpsa_
        complexed with edo, gal, gol, nag, sia
      2. 2411423Domain d4jcfb_: 4jcf B: [223690]
        automated match to d1vpsa_
        complexed with edo, gal, gol, nag, sia
      3. 2411424Domain d4jcfc_: 4jcf C: [223691]
        automated match to d1vpsa_
        complexed with edo, gal, gol, nag, sia
      4. 2411425Domain d4jcfd_: 4jcf D: [223692]
        automated match to d1vpsa_
        complexed with edo, gal, gol, nag, sia
      5. 2411426Domain d4jcfe_: 4jcf E: [223693]
        automated match to d1vpsa_
        complexed with edo, gal, gol, nag, sia
  3. 2411427Ki polyomavirus [TaxId:423445] [226165] (1 PDB entry)
  4. 2411438Polyomavirus hpyv7 [TaxId:746831] [258722] (1 PDB entry)
  5. 2411444Simian virus 40 [TaxId:10633] [225418] (2 PDB entries)
    1. Domains for 3bwq:
      1. 2411450Domain d3bwqa_: 3bwq A: [208734]
        automated match to d1vpsa_
      2. 2411451Domain d3bwqb_: 3bwq B: [231864]
        automated match to d3bwqd_
      3. 2411452Domain d3bwqc_: 3bwq C: [208735]
        automated match to d1vpsa_
      4. 2411453Domain d3bwqd_: 3bwq D: [208736]
        automated match to d1vpsa_
      5. 2411454Domain d3bwqe_: 3bwq E: [208737]
        automated match to d1vpsa_
    2. Domains for 3bwr:
      1. 2411445Domain d3bwra_: 3bwr A: [208738]
        automated match to d1vpsa_
        complexed with bgc, edo, gal, nga, sia
      2. 2411446Domain d3bwrb_: 3bwr B: [231865]
        automated match to d3bwqd_
        complexed with bgc, edo, gal, nga, sia
      3. 2411447Domain d3bwrc_: 3bwr C: [208739]
        automated match to d1vpsa_
        complexed with bgc, edo, gal, nga, sia
      4. 2411448Domain d3bwrd_: 3bwr D: [208740]
        automated match to d1vpsa_
        complexed with bgc, edo, gal, nga, sia
      5. 2411449Domain d3bwre_: 3bwr E: [208741]
        automated match to d1vpsa_
        complexed with bgc, edo, gal, nga, sia
  6. 2411455Wu polyomavirus [TaxId:440266] [226166] (1 PDB entry)

More info for Protein automated matches from b.121.6.0: automated matches

Timeline for Protein automated matches from b.121.6.0: automated matches: