Lineage for Species: Thermococcus kodakaraensis [TaxId: 69014]

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2424105Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families) (S)
    automatically mapped to Pfam PF00016
  5. 2424498Family c.1.14.0: automated matches [227297] (1 protein)
    not a true family
  6. 2424499Protein automated matches [227123] (7 species)
    not a true protein
  7. 2424541Species Thermococcus kodakaraensis [TaxId:69014] [226770] (2 PDB entries)

PDB entries in Species: Thermococcus kodakaraensis [TaxId: 69014]:

  1. Domain(s) for 3kdn:
    1. 2424542Domain d3kdna2: 3kdn A:136-444 [212304]
      Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    2. 2424543Domain d3kdnb2: 3kdn B:136-444 [212306]
      Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    3. 2424544Domain d3kdnc2: 3kdn C:136-444 [212308]
      Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    4. 2424545Domain d3kdnd2: 3kdn D:136-444 [212310]
      Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    5. 2424546Domain d3kdne2: 3kdn E:136-444 [212312]
      Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    6. 2424547Domain d3kdnf2: 3kdn F:136-444 [212314]
      Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    7. 2424548Domain d3kdng2: 3kdn G:136-444 [212316]
      Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    8. 2424549Domain d3kdnh2: 3kdn H:136-444 [212318]
      Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    9. 2424550Domain d3kdni2: 3kdn I:136-444 [212320]
      Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    10. 2424551Domain d3kdnj2: 3kdn J:136-444 [212322]
      Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
  2. Domain(s) for 3kdo:
    1. 2424552Domain d3kdoa2: 3kdo A:136-444 [212324]
      Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    2. 2424553Domain d3kdob2: 3kdo B:136-444 [212326]
      Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    3. 2424554Domain d3kdoc2: 3kdo C:136-444 [212328]
      Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    4. 2424555Domain d3kdod2: 3kdo D:136-444 [212330]
      Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    5. 2424556Domain d3kdoe2: 3kdo E:136-444 [212332]
      Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    6. 2424557Domain d3kdof2: 3kdo F:136-444 [212334]
      Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    7. 2424558Domain d3kdog2: 3kdo G:136-444 [212336]
      Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    8. 2424559Domain d3kdoh2: 3kdo H:136-444 [212338]
      Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    9. 2424560Domain d3kdoi2: 3kdo I:136-444 [212340]
      Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
      automated match to d1bxna1
      complexed with cap, mg; mutant
    10. 2424561Domain d3kdoj2: 3kdo J:136-444 [212342]
      Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
      automated match to d1bxna1
      complexed with cap, mg; mutant

More info for Species Thermococcus kodakaraensis [TaxId:69014] from c.1.14.0 automated matches

Timeline for Species Thermococcus kodakaraensis [TaxId:69014] from c.1.14.0 automated matches: