Lineage for Species: Pyrococcus kodakaraensis [TaxId: 69014]

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2089714Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2100572Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families) (S)
    automatically mapped to Pfam PF00016
  5. 2100959Family c.1.14.0: automated matches [227297] (1 protein)
    not a true family
  6. 2100960Protein automated matches [227123] (7 species)
    not a true protein
  7. 2100982Species Pyrococcus kodakaraensis [TaxId:69014] [226763] (2 PDB entries)

PDB entries in Species: Pyrococcus kodakaraensis [TaxId: 69014]:

  1. Domain(s) for 3a13:
    1. 2100983Domain d3a13a2: 3a13 A:136-444 [208062]
      Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
      automated match to d1bxna1
      complexed with ca, cap, mg; mutant
    2. 2100984Domain d3a13b2: 3a13 B:136-444 [208064]
      Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
      automated match to d1bxna1
      complexed with ca, cap, mg; mutant
    3. 2100985Domain d3a13c2: 3a13 C:136-444 [208066]
      Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
      automated match to d1bxna1
      complexed with ca, cap, mg; mutant
    4. 2100986Domain d3a13d2: 3a13 D:136-444 [208068]
      Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
      automated match to d1bxna1
      complexed with ca, cap, mg; mutant
    5. 2100987Domain d3a13e2: 3a13 E:136-444 [208070]
      Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
      automated match to d1bxna1
      complexed with ca, cap, mg; mutant
    6. 2100988Domain d3a13f2: 3a13 F:136-444 [208072]
      Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
      automated match to d1bxna1
      complexed with ca, cap, mg; mutant
    7. 2100989Domain d3a13g2: 3a13 G:136-444 [208074]
      Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
      automated match to d1bxna1
      complexed with ca, cap, mg; mutant
    8. 2100990Domain d3a13h2: 3a13 H:136-444 [208076]
      Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
      automated match to d1bxna1
      complexed with ca, cap, mg; mutant
    9. 2100991Domain d3a13i2: 3a13 I:136-444 [208078]
      Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
      automated match to d1bxna1
      complexed with ca, cap, mg; mutant
    10. 2100992Domain d3a13j2: 3a13 J:136-444 [208080]
      Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
      automated match to d1bxna1
      complexed with ca, cap, mg; mutant
  2. Domain(s) for 3wqp:
    1. 2100993Domain d3wqpa2: 3wqp A:136-444 [306810]
      Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
      automated match to d3a13a2
      complexed with cap, edo, mg; mutant
    2. 2100994Domain d3wqpb2: 3wqp B:136-444 [306812]
      Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
      automated match to d3a13a2
      complexed with cap, edo, mg; mutant
    3. 2100995Domain d3wqpc2: 3wqp C:136-444 [306814]
      Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
      automated match to d3a13a2
      complexed with cap, edo, mg; mutant
    4. 2100996Domain d3wqpd2: 3wqp D:136-444 [306816]
      Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
      automated match to d3a13a2
      complexed with cap, edo, mg; mutant
    5. 2100997Domain d3wqpe2: 3wqp E:136-444 [306818]
      Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
      automated match to d3a13a2
      complexed with cap, edo, mg; mutant
    6. 2100998Domain d3wqpg2: 3wqp G:136-444 [306822]
      Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
      automated match to d3a13a2
      complexed with cap, edo, mg; mutant
    7. 2100999Domain d3wqph2: 3wqp H:136-444 [306824]
      Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
      automated match to d3a13a2
      complexed with cap, edo, mg; mutant
    8. 2101000Domain d3wqpi2: 3wqp I:136-444 [306826]
      Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
      automated match to d3a13a2
      complexed with cap, edo, mg; mutant
    9. 2101001Domain d3wqpj2: 3wqp J:136-444 [306828]
      Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
      automated match to d3a13a2
      complexed with cap, edo, mg; mutant

More info for Species Pyrococcus kodakaraensis [TaxId:69014] from c.1.14.0 automated matches

Timeline for Species Pyrococcus kodakaraensis [TaxId:69014] from c.1.14.0 automated matches: