Lineage for Species: Pyrococcus kodakaraensis [TaxId: 69014]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2175267Superfamily d.58.9: RuBisCO, large subunit, small (N-terminal) domain [54966] (2 families) (S)
    C-terminal domain is beta/alpha barrel
  5. 2175463Family d.58.9.0: automated matches [227234] (1 protein)
    not a true family
  6. 2175464Protein automated matches [226983] (18 species)
    not a true protein
  7. 2175574Species Pyrococcus kodakaraensis [TaxId:69014] [225861] (2 PDB entries)

PDB entries in Species: Pyrococcus kodakaraensis [TaxId: 69014]:

  1. Domain(s) for 3a13:
    1. 2175575Domain d3a13a1: 3a13 A:9-135 [208061]
      Other proteins in same PDB: d3a13a2, d3a13b2, d3a13c2, d3a13d2, d3a13e2, d3a13f2, d3a13g2, d3a13h2, d3a13i2, d3a13j2
      automated match to d1bxna2
      complexed with ca, cap, mg; mutant
    2. 2175576Domain d3a13b1: 3a13 B:8-135 [208063]
      Other proteins in same PDB: d3a13a2, d3a13b2, d3a13c2, d3a13d2, d3a13e2, d3a13f2, d3a13g2, d3a13h2, d3a13i2, d3a13j2
      automated match to d1bxna2
      complexed with ca, cap, mg; mutant
    3. 2175577Domain d3a13c1: 3a13 C:7-135 [208065]
      Other proteins in same PDB: d3a13a2, d3a13b2, d3a13c2, d3a13d2, d3a13e2, d3a13f2, d3a13g2, d3a13h2, d3a13i2, d3a13j2
      automated match to d1bxna2
      complexed with ca, cap, mg; mutant
    4. 2175578Domain d3a13d1: 3a13 D:5-135 [208067]
      Other proteins in same PDB: d3a13a2, d3a13b2, d3a13c2, d3a13d2, d3a13e2, d3a13f2, d3a13g2, d3a13h2, d3a13i2, d3a13j2
      automated match to d1bxna2
      complexed with ca, cap, mg; mutant
    5. 2175579Domain d3a13e1: 3a13 E:8-135 [208069]
      Other proteins in same PDB: d3a13a2, d3a13b2, d3a13c2, d3a13d2, d3a13e2, d3a13f2, d3a13g2, d3a13h2, d3a13i2, d3a13j2
      automated match to d1bxna2
      complexed with ca, cap, mg; mutant
    6. 2175580Domain d3a13f1: 3a13 F:8-135 [208071]
      Other proteins in same PDB: d3a13a2, d3a13b2, d3a13c2, d3a13d2, d3a13e2, d3a13f2, d3a13g2, d3a13h2, d3a13i2, d3a13j2
      automated match to d1bxna2
      complexed with ca, cap, mg; mutant
    7. 2175581Domain d3a13g1: 3a13 G:8-135 [208073]
      Other proteins in same PDB: d3a13a2, d3a13b2, d3a13c2, d3a13d2, d3a13e2, d3a13f2, d3a13g2, d3a13h2, d3a13i2, d3a13j2
      automated match to d1bxna2
      complexed with ca, cap, mg; mutant
    8. 2175582Domain d3a13h1: 3a13 H:7-135 [208075]
      Other proteins in same PDB: d3a13a2, d3a13b2, d3a13c2, d3a13d2, d3a13e2, d3a13f2, d3a13g2, d3a13h2, d3a13i2, d3a13j2
      automated match to d1bxna2
      complexed with ca, cap, mg; mutant
    9. 2175583Domain d3a13i1: 3a13 I:5-135 [208077]
      Other proteins in same PDB: d3a13a2, d3a13b2, d3a13c2, d3a13d2, d3a13e2, d3a13f2, d3a13g2, d3a13h2, d3a13i2, d3a13j2
      automated match to d1bxna2
      complexed with ca, cap, mg; mutant
    10. 2175584Domain d3a13j1: 3a13 J:8-135 [208079]
      Other proteins in same PDB: d3a13a2, d3a13b2, d3a13c2, d3a13d2, d3a13e2, d3a13f2, d3a13g2, d3a13h2, d3a13i2, d3a13j2
      automated match to d1bxna2
      complexed with ca, cap, mg; mutant
  2. Domain(s) for 3wqp:
    1. 2175585Domain d3wqpa1: 3wqp A:8-135 [306809]
      Other proteins in same PDB: d3wqpa2, d3wqpb2, d3wqpc2, d3wqpd2, d3wqpe2, d3wqpf2, d3wqpg2, d3wqph2, d3wqpi2, d3wqpj2
      automated match to d3a13d1
      complexed with cap, edo, mg; mutant
    2. 2175586Domain d3wqpb1: 3wqp B:7-135 [306811]
      Other proteins in same PDB: d3wqpa2, d3wqpb2, d3wqpc2, d3wqpd2, d3wqpe2, d3wqpf2, d3wqpg2, d3wqph2, d3wqpi2, d3wqpj2
      automated match to d3a13d1
      complexed with cap, edo, mg; mutant
    3. 2175587Domain d3wqpc1: 3wqp C:7-135 [306813]
      Other proteins in same PDB: d3wqpa2, d3wqpb2, d3wqpc2, d3wqpd2, d3wqpe2, d3wqpf2, d3wqpg2, d3wqph2, d3wqpi2, d3wqpj2
      automated match to d3a13d1
      complexed with cap, edo, mg; mutant
    4. 2175588Domain d3wqpd1: 3wqp D:9-135 [306815]
      Other proteins in same PDB: d3wqpa2, d3wqpb2, d3wqpc2, d3wqpd2, d3wqpe2, d3wqpf2, d3wqpg2, d3wqph2, d3wqpi2, d3wqpj2
      automated match to d3a13d1
      complexed with cap, edo, mg; mutant
    5. 2175589Domain d3wqpe1: 3wqp E:7-135 [306817]
      Other proteins in same PDB: d3wqpa2, d3wqpb2, d3wqpc2, d3wqpd2, d3wqpe2, d3wqpf2, d3wqpg2, d3wqph2, d3wqpi2, d3wqpj2
      automated match to d3a13d1
      complexed with cap, edo, mg; mutant
    6. 2175590Domain d3wqpg1: 3wqp G:9-135 [306821]
      Other proteins in same PDB: d3wqpa2, d3wqpb2, d3wqpc2, d3wqpd2, d3wqpe2, d3wqpf2, d3wqpg2, d3wqph2, d3wqpi2, d3wqpj2
      automated match to d3a13d1
      complexed with cap, edo, mg; mutant
    7. 2175591Domain d3wqph1: 3wqp H:8-135 [306823]
      Other proteins in same PDB: d3wqpa2, d3wqpb2, d3wqpc2, d3wqpd2, d3wqpe2, d3wqpf2, d3wqpg2, d3wqph2, d3wqpi2, d3wqpj2
      automated match to d3a13d1
      complexed with cap, edo, mg; mutant
    8. 2175592Domain d3wqpi1: 3wqp I:9-135 [306825]
      Other proteins in same PDB: d3wqpa2, d3wqpb2, d3wqpc2, d3wqpd2, d3wqpe2, d3wqpf2, d3wqpg2, d3wqph2, d3wqpi2, d3wqpj2
      automated match to d3a13d1
      complexed with cap, edo, mg; mutant
    9. 2175593Domain d3wqpj1: 3wqp J:8-135 [306827]
      Other proteins in same PDB: d3wqpa2, d3wqpb2, d3wqpc2, d3wqpd2, d3wqpe2, d3wqpf2, d3wqpg2, d3wqph2, d3wqpi2, d3wqpj2
      automated match to d3a13d1
      complexed with cap, edo, mg; mutant

More info for Species Pyrococcus kodakaraensis [TaxId:69014] from d.58.9.0 automated matches

Timeline for Species Pyrococcus kodakaraensis [TaxId:69014] from d.58.9.0 automated matches: