Lineage for Species: Pyrococcus abyssi [TaxId: 29292]

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2967341Fold d.101: Ribonuclease PH domain 2-like [55665] (1 superfamily)
    beta(2)-alpha-beta(2)-alpha; 3 layers: alpha/beta/alpha; antiparallel sheet: order 2134
  4. 2967342Superfamily d.101.1: Ribonuclease PH domain 2-like [55666] (2 families) (S)
  5. 2967494Family d.101.1.0: automated matches [227218] (1 protein)
    not a true family
  6. 2967495Protein automated matches [226956] (5 species)
    not a true protein
  7. 2967512Species Pyrococcus abyssi [TaxId:29292] [225428] (4 PDB entries)

PDB entries in Species: Pyrococcus abyssi [TaxId: 29292]:

  1. Domain(s) for 2pnz:
    1. 2967515Domain d2pnza2: 2pnz A:154-244 [205560]
      Other proteins in same PDB: d2pnza1, d2pnzb1
      automated match to d2nn6b2
      complexed with 5gp, mpd, udp
    2. 2967516Domain d2pnzb2: 2pnz B:188-274 [238805]
      Other proteins in same PDB: d2pnza1, d2pnzb1
      automated match to d2wnra2
      complexed with 5gp, mpd, udp
  2. Domain(s) for 2po0:
    1. 2967517Domain d2po0a2: 2po0 A:154-244 [205562]
      Other proteins in same PDB: d2po0a1, d2po0b1
      automated match to d2nn6b2
      complexed with adp, mpd
    2. 2967518Domain d2po0b2: 2po0 B:188-274 [238807]
      Other proteins in same PDB: d2po0a1, d2po0b1
      automated match to d2wnra2
      complexed with adp, mpd
  3. Domain(s) for 2po1:
    1. 2967513Domain d2po1a2: 2po1 A:154-244 [205564]
      Other proteins in same PDB: d2po1a1, d2po1b1
      automated match to d2nn6b2
      protein/RNA complex; complexed with mpd
    2. 2967514Domain d2po1b2: 2po1 B:188-274 [238809]
      Other proteins in same PDB: d2po1a1, d2po1b1
      automated match to d2wnra2
      protein/RNA complex; complexed with mpd
  4. Domain(s) for 2po2:
    1. 2967519Domain d2po2a2: 2po2 A:154-244 [205566]
      Other proteins in same PDB: d2po2a1, d2po2b1
      automated match to d2nn6b2
      complexed with cdp, mpd
    2. 2967520Domain d2po2b2: 2po2 B:188-274 [238811]
      Other proteins in same PDB: d2po2a1, d2po2b1
      automated match to d2wnra2
      complexed with cdp, mpd

More info for Species Pyrococcus abyssi [TaxId:29292] from d.101.1.0 automated matches

Timeline for Species Pyrococcus abyssi [TaxId:29292] from d.101.1.0 automated matches: