Lineage for Species: Pyrococcus abyssi [TaxId: 29292]

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2930059Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
    core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
  4. 2930060Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families) (S)
  5. 2930912Family d.14.1.0: automated matches [191504] (1 protein)
    not a true family
  6. 2930913Protein automated matches [190826] (23 species)
    not a true protein
  7. 2931135Species Pyrococcus abyssi [TaxId:29292] [225427] (4 PDB entries)

PDB entries in Species: Pyrococcus abyssi [TaxId: 29292]:

  1. Domain(s) for 2pnz:
    1. 2931138Domain d2pnza1: 2pnz A:9-153 [205559]
      Other proteins in same PDB: d2pnza2, d2pnzb2
      automated match to d2nn6b1
      complexed with 5gp, mpd, udp
    2. 2931139Domain d2pnzb1: 2pnz B:8-187 [238804]
      Other proteins in same PDB: d2pnza2, d2pnzb2
      automated match to d2wnra1
      complexed with 5gp, mpd, udp
  2. Domain(s) for 2po0:
    1. 2931140Domain d2po0a1: 2po0 A:9-153 [205561]
      Other proteins in same PDB: d2po0a2, d2po0b2
      automated match to d2nn6b1
      complexed with adp, mpd
    2. 2931141Domain d2po0b1: 2po0 B:8-187 [238806]
      Other proteins in same PDB: d2po0a2, d2po0b2
      automated match to d2wnra1
      complexed with adp, mpd
  3. Domain(s) for 2po1:
    1. 2931136Domain d2po1a1: 2po1 A:9-153 [205563]
      Other proteins in same PDB: d2po1a2, d2po1b2
      automated match to d2nn6b1
      protein/RNA complex; complexed with mpd
    2. 2931137Domain d2po1b1: 2po1 B:8-187 [238808]
      Other proteins in same PDB: d2po1a2, d2po1b2
      automated match to d2wnra1
      protein/RNA complex; complexed with mpd
  4. Domain(s) for 2po2:
    1. 2931142Domain d2po2a1: 2po2 A:9-153 [205565]
      Other proteins in same PDB: d2po2a2, d2po2b2
      automated match to d2nn6b1
      complexed with cdp, mpd
    2. 2931143Domain d2po2b1: 2po2 B:8-187 [238810]
      Other proteins in same PDB: d2po2a2, d2po2b2
      automated match to d2wnra1
      complexed with cdp, mpd

More info for Species Pyrococcus abyssi [TaxId:29292] from d.14.1.0 automated matches

Timeline for Species Pyrococcus abyssi [TaxId:29292] from d.14.1.0 automated matches: