Lineage for Species: Oryza sativa [TaxId: 39947]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2081496Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2083716Family c.1.8.0: automated matches [191314] (1 protein)
    not a true family
  6. 2083717Protein automated matches [190075] (90 species)
    not a true protein
  7. 2084005Species Oryza sativa [TaxId:39947] [225407] (27 PDB entries)

PDB entries in Species: Oryza sativa [TaxId: 39947]:

  1. Domain(s) for 2rgl:
    1. 2084043Domain d2rgla_: 2rgl A: [206096]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn
    2. 2084044Domain d2rglb_: 2rgl B: [206097]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn
  2. Domain(s) for 2rgm:
    1. 2084008Domain d2rgma_: 2rgm A: [206098]
      automated match to d1v03a_
      complexed with g2f, gol, mes, so4, zn
    2. 2084009Domain d2rgmb_: 2rgm B: [206099]
      automated match to d1v03a_
      complexed with g2f, gol, mes, so4, zn
  3. Domain(s) for 3aht:
    1. 2084053Domain d3ahta_: 3aht A: [208213]
      automated match to d1v03a_
      complexed with lb2, mes, so4, zn; mutant
    2. 2084054Domain d3ahtb_: 3aht B: [208214]
      automated match to d1v03a_
      complexed with lb2, mes, so4, zn; mutant
  4. Domain(s) for 3ahv:
    1. 2084033Domain d3ahva_: 3ahv A: [208215]
      automated match to d1v03a_
      complexed with g2f, gol, mes, so4, zn; mutant
    2. 2084034Domain d3ahvb_: 3ahv B: [208216]
      automated match to d1v03a_
      complexed with g2f, gol, mes, so4, zn; mutant
  5. Domain(s) for 3f4v:
    1. 2084014Domain d3f4va_: 3f4v A: [209793]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
    2. 2084015Domain d3f4vb_: 3f4v B: [209794]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
  6. Domain(s) for 3f5i:
    1. 2084017Domain d3f5ia_: 3f5i A: [305355]
      automated match to d1v03a_
      complexed with g2f, gol, mes, so4, zn; mutant
    2. 2084018Domain d3f5ib_: 3f5i B: [305356]
      automated match to d1v03a_
      complexed with g2f, gol, mes, so4, zn; mutant
  7. Domain(s) for 3f5j:
    1. 2084035Domain d3f5ja_: 3f5j A: [209795]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 2084036Domain d3f5jb_: 3f5j B: [209796]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  8. Domain(s) for 3f5k:
    1. 2084020Domain d3f5ka_: 3f5k A: [209797]
      automated match to d1v03a_
      complexed with ce5, gol, mes, so4, zn; mutant
    2. 2084021Domain d3f5kb_: 3f5k B: [209798]
      automated match to d1v03a_
      complexed with ce5, gol, mes, so4, zn; mutant
  9. Domain(s) for 3f5l:
    1. 2084006Domain d3f5la_: 3f5l A: [209799]
      automated match to d1v03a_
      complexed with lb2, mes, so4, zn; mutant
    2. 2084007Domain d3f5lb_: 3f5l B: [209800]
      automated match to d1v03a_
      complexed with lb2, mes, so4, zn; mutant
  10. Domain(s) for 3gno:
  11. Domain(s) for 3gnp:
  12. Domain(s) for 3gnr:
  13. Domain(s) for 3scn:
    1. 2084045Domain d3scna_: 3scn A: [216325]
      automated match to d1v03a_
      complexed with mes, so4, zn; mutant
    2. 2084046Domain d3scnb_: 3scn B: [216326]
      automated match to d1v03a_
      complexed with mes, so4, zn; mutant
  14. Domain(s) for 3sco:
    1. 2084031Domain d3scoa_: 3sco A: [216327]
      automated match to d1v03a_
      complexed with glf, gol, mes, so4, zn; mutant
    2. 2084032Domain d3scob_: 3sco B: [216328]
      automated match to d1v03a_
      complexed with glf, gol, mes, so4, zn; mutant
  15. Domain(s) for 3scp:
    1. 2084037Domain d3scpa_: 3scp A: [216329]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
    2. 2084038Domain d3scpb_: 3scp B: [216330]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
  16. Domain(s) for 3scq:
    1. 2084039Domain d3scqa_: 3scq A: [216331]
      automated match to d1v03a_
      complexed with glf, mes, so4, zn; mutant
    2. 2084040Domain d3scqb_: 3scq B: [216332]
      automated match to d1v03a_
      complexed with glf, mes, so4, zn; mutant
  17. Domain(s) for 3scr:
    1. 2084022Domain d3scra_: 3scr A: [216333]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
    2. 2084023Domain d3scrb_: 3scr B: [216334]
      automated match to d1v03a_
      complexed with gol, mes, so4, zn; mutant
  18. Domain(s) for 3scs:
    1. 2084026Domain d3scsa_: 3scs A: [216335]
      automated match to d1v03a_
      complexed with glf, gol, mes, so4, zn; mutant
    2. 2084027Domain d3scsb_: 3scs B: [216336]
      automated match to d1v03a_
      complexed with glf, gol, mes, so4, zn; mutant
  19. Domain(s) for 3sct:
    1. 2084012Domain d3scta_: 3sct A: [216337]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 2084013Domain d3sctb_: 3sct B: [216338]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  20. Domain(s) for 3scu:
    1. 2084010Domain d3scua_: 3scu A: [216339]
      automated match to d1v03a_
      complexed with ce5, mes, so4, zn; mutant
    2. 2084011Domain d3scub_: 3scu B: [216340]
      automated match to d1v03a_
      complexed with ce5, mes, so4, zn; mutant
  21. Domain(s) for 3scv:
    1. 2084041Domain d3scva_: 3scv A: [216341]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 2084042Domain d3scvb_: 3scv B: [216342]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  22. Domain(s) for 3scw:
    1. 2084029Domain d3scwa_: 3scw A: [216343]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 2084030Domain d3scwb_: 3scw B: [216344]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  23. Domain(s) for 3wba:
  24. Domain(s) for 3wbe:
  25. Domain(s) for 4qlj:
    1. 2084051Domain d4qlja_: 4qlj A: [273896]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 2084052Domain d4qljb_: 4qlj B: [273895]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  26. Domain(s) for 4qlk:
    1. 2084047Domain d4qlka_: 4qlk A: [273898]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 2084048Domain d4qlkb_: 4qlk B: [273900]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
  27. Domain(s) for 4qll:
    1. 2084049Domain d4qlla_: 4qll A: [273901]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant
    2. 2084050Domain d4qllb_: 4qll B: [273903]
      automated match to d1v03a_
      complexed with ctt, mes, so4, zn; mutant

More info for Species Oryza sativa [TaxId:39947] from c.1.8.0 automated matches

Timeline for Species Oryza sativa [TaxId:39947] from c.1.8.0 automated matches: