Lineage for Species: Cow (Bos taurus) [TaxId: 9913]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2158220Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2158221Family d.15.1.1: Ubiquitin-related [54237] (39 protein domains)
    Pfam PF00240
  6. 2158454Protein Ubiquitin [54238] (8 species)
  7. 2158468Species Cow (Bos taurus) [TaxId:9913] [224919] (34 PDB entries)

PDB entries in Species: Cow (Bos taurus) [TaxId: 9913]:

  1. Domain(s) for 1aar:
    1. 2158502Domain d1aara_: 1aar A: [37586]
      di-ubiquitin
    2. 2158503Domain d1aarb_: 1aar B: [37587]
      di-ubiquitin
  2. Domain(s) for 1p3q:
    1. 2158530Domain d1p3qu_: 1p3q U: [87750]
      Other proteins in same PDB: d1p3qq_, d1p3qr_
      annotated as bovine in PDB, identical to human sequence
    2. 2158531Domain d1p3qv_: 1p3q V: [87751]
      Other proteins in same PDB: d1p3qq_, d1p3qr_
      annotated as bovine in PDB, identical to human sequence
  3. Domain(s) for 1uzx:
    • 2158492Domain d1uzxb_: 1uzx B: [100239]
      Other proteins in same PDB: d1uzxa_
      annotated as bovine in PDB, identical to human sequence
      complexed with mes, so4
  4. Domain(s) for 1wr6:
    1. 2158511Domain d1wr6e_: 1wr6 E: [121186]
      Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
      automated match to d1aara_
    2. 2158512Domain d1wr6f_: 1wr6 F: [121187]
      Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
      automated match to d1aara_
    3. 2158513Domain d1wr6g_: 1wr6 G: [121188]
      Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
      automated match to d1aara_
    4. 2158514Domain d1wr6h_: 1wr6 H: [121189]
      Other proteins in same PDB: d1wr6a1, d1wr6b_, d1wr6c_, d1wr6d_
      automated match to d1aara_
  5. Domain(s) for 1wrd:
  6. Domain(s) for 1yd8:
    1. 2158524Domain d1yd8u_: 1yd8 U: [122974]
      Other proteins in same PDB: d1yd8g1, d1yd8g2, d1yd8h2, d1yd8h3
      automated match to d1aara_
    2. 2158525Domain d1yd8v_: 1yd8 V: [122975]
      Other proteins in same PDB: d1yd8g1, d1yd8g2, d1yd8h2, d1yd8h3
      automated match to d1aara_
  7. Domain(s) for 2c7m:
  8. Domain(s) for 2c7n:
    1. 2158495Domain d2c7nb1: 2c7n B:1-74 [130070]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
    2. 2158496Domain d2c7nd1: 2c7n D:1-74 [130072]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
    3. 2158497Domain d2c7nf1: 2c7n F:1-74 [130073]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
    4. 2158498Domain d2c7nh1: 2c7n H:1-73 [130075]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
    5. 2158499Domain d2c7nj1: 2c7n J:1-72 [130077]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
    6. 2158500Domain d2c7nl1: 2c7n L:1-74 [130078]
      Other proteins in same PDB: d2c7na1, d2c7nc1, d2c7ng1, d2c7ni1
      automatically matched to d1aara_
      complexed with zn
  9. Domain(s) for 2d3g:
    1. 2158481Domain d2d3ga_: 2d3g A: [131206]
      automated match to d1aara_
    2. 2158482Domain d2d3gb_: 2d3g B: [131207]
      automated match to d1aara_
  10. Domain(s) for 2dx5:
  11. Domain(s) for 2fid:
  12. Domain(s) for 2fif:
    1. 2158506Domain d2fifa_: 2fif A: [133518]
      Other proteins in same PDB: d2fifb_, d2fifd_, d2fiff_
      automated match to d1aara_
      complexed with so4, zn
    2. 2158507Domain d2fifc_: 2fif C: [133520]
      Other proteins in same PDB: d2fifb_, d2fifd_, d2fiff_
      automated match to d1aara_
      complexed with so4, zn
    3. 2158508Domain d2fife_: 2fif E: [133522]
      Other proteins in same PDB: d2fifb_, d2fifd_, d2fiff_
      automated match to d1aara_
      complexed with so4, zn
  13. Domain(s) for 2hd5:
  14. Domain(s) for 2oob:
  15. Domain(s) for 2qho:
    1. 2158488Domain d2qhoa_: 2qho A: [150790]
      automated match to d1aara_
    2. 2158489Domain d2qhoc_: 2qho C: [150791]
      automated match to d1aara_
    3. 2158490Domain d2qhoe_: 2qho E: [150792]
      automated match to d1aara_
    4. 2158491Domain d2qhog_: 2qho G: [150793]
      automated match to d1aara_
  16. Domain(s) for 2wwz:
    1. 2158469Domain d2wwza_: 2wwz A: [169677]
      automated match to d1aara_
      complexed with zn
    2. 2158470Domain d2wwzb_: 2wwz B: [169678]
      automated match to d1aara_
      complexed with zn
  17. Domain(s) for 2xbb:
    1. 2158509Domain d2xbbc_: 2xbb C: [169990]
      Other proteins in same PDB: d2xbba_, d2xbbb_
      automated match to d1aara_
      complexed with gol
    2. 2158510Domain d2xbbd_: 2xbb D: [169991]
      Other proteins in same PDB: d2xbba_, d2xbbb_
      automated match to d1aara_
      complexed with gol
  18. Domain(s) for 2zcc:
    1. 2158471Domain d2zcca_: 2zcc A: [154337]
      automated match to d1aara_
      complexed with zn
    2. 2158472Domain d2zccb_: 2zcc B: [154338]
      automated match to d1aara_
      complexed with zn
    3. 2158473Domain d2zccc_: 2zcc C: [154339]
      automated match to d1aara_
      complexed with zn
  19. Domain(s) for 3ldz:
    1. 2158527Domain d3ldze_: 3ldz E: [180204]
      Other proteins in same PDB: d3ldza_, d3ldzb_, d3ldzc_, d3ldzd_
      automated match to d1p3qu_
    2. 2158528Domain d3ldzf_: 3ldz F: [180205]
      Other proteins in same PDB: d3ldza_, d3ldzb_, d3ldzc_, d3ldzd_
      automated match to d1p3qu_
    3. 2158529Domain d3ldzg_: 3ldz G: [180206]
      Other proteins in same PDB: d3ldza_, d3ldzb_, d3ldzc_, d3ldzd_
      automated match to d1p3qu_
  20. Domain(s) for 3m3j:
    1. 2158475Domain d3m3ja_: 3m3j A: [180788]
      automated match to d1aara_
      complexed with edo, so4
    2. 2158476Domain d3m3jb_: 3m3j B: [180789]
      automated match to d1aara_
      complexed with edo, so4
    3. 2158477Domain d3m3jc_: 3m3j C: [180790]
      automated match to d1aara_
      complexed with edo, so4
    4. 2158478Domain d3m3jd_: 3m3j D: [180791]
      automated match to d1aara_
      complexed with edo, so4
    5. 2158479Domain d3m3je_: 3m3j E: [180792]
      automated match to d1aara_
      complexed with edo, so4
    6. 2158480Domain d3m3jf_: 3m3j F: [180793]
      automated match to d1aara_
      complexed with edo, so4
  21. Domain(s) for 4bbn:
  22. Domain(s) for 4ljo:
  23. Domain(s) for 4ljp:
  24. Domain(s) for 4m0w:
  25. Domain(s) for 4s22:
    1. 2158520Domain d4s22a_: 4s22 A: [271240]
      automated match to d1ogwa_
      complexed with edo, gol, iod
    2. 2158521Domain d4s22b_: 4s22 B: [271242]
      automated match to d1ogwa_
      complexed with edo, gol, iod
    3. 2158522Domain d4s22c_: 4s22 C: [271241]
      automated match to d1ogwa_
      complexed with edo, gol, iod
    4. 2158523Domain d4s22d_: 4s22 D: [271243]
      automated match to d1ogwa_
      complexed with edo, gol, iod
  26. Domain(s) for 4xkh:
    1. 2268284Domain d4xkha_: 4xkh A: [311590]
      automated match to d4k1rb_
    2. 2268292Domain d4xkhb_: 4xkh B: [311598]
      automated match to d4k1rb_
    3. 2268313Domain d4xkhf_: 4xkh F: [311619]
      automated match to d4k1rb_
    4. 2268317Domain d4xkhd_: 4xkh D: [311623]
      automated match to d4k1rb_
    5. 2268322Domain d4xkhi_: 4xkh I: [311628]
      automated match to d4k1rb_
    6. 2268363Domain d4xkhg_: 4xkh G: [311669]
      automated match to d4k1rb_
  27. Domain(s) for 4xyz:
    1. 2158493Domain d4xyza_: 4xyz A: [270871]
      automated match to d1ogwa_
      complexed with act, edo, iod, pg4
    2. 2158494Domain d4xyzb_: 4xyz B: [270872]
      automated match to d1ogwa_
      complexed with act, edo, iod, pg4
  28. Domain(s) for 4y1h:
  29. Domain(s) for 4z9s:
    1. 2158516Domain d4z9sa_: 4z9s A: [275515]
      automated match to d1ogwa_
      complexed with mla, scn
    2. 2158517Domain d4z9sb_: 4z9s B: [275517]
      automated match to d1ogwa_
      complexed with mla, scn
    3. 2158518Domain d4z9sc_: 4z9s C: [275516]
      automated match to d1ogwa_
      complexed with mla, scn
    4. 2158519Domain d4z9sd_: 4z9s D: [275518]
      automated match to d1ogwa_
      complexed with mla, scn
  30. Domain(s) for 5bz0:
  31. Domain(s) for 5fer:
    1. 2274165Domain d5ferf_: 5fer F: [317466]
      Other proteins in same PDB: d5ferb_, d5fere_
      automated match to d1ogwa_
      complexed with zn
    2. 2274171Domain d5ferc_: 5fer C: [317472]
      Other proteins in same PDB: d5ferb_, d5fere_
      automated match to d1ogwa_
      complexed with zn
  32. Domain(s) for 5jqs:
  33. Domain(s) for 5mn9:
    1. 2285732Domain d5mn9b_: 5mn9 B: [329033]
      automated match to d1ogwa_
    2. 2285858Domain d5mn9a_: 5mn9 A: [329159]
      automated match to d1ogwa_
  34. Domain(s) for 5tr4:
    1. 2297765Domain d5tr4b_: 5tr4 B: [341066]
      automated match to d1otrb_
      complexed with 61t
    2. 2297860Domain d5tr4d_: 5tr4 D: [341161]
      automated match to d1otrb_
      complexed with 61t

More info for Species Cow (Bos taurus) [TaxId:9913] from d.15.1.1 Ubiquitin

Timeline for Species Cow (Bos taurus) [TaxId:9913] from d.15.1.1 Ubiquitin: