Lineage for Species: Human immunodeficiency virus 1 [TaxId: 11676]

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2408655Fold b.50: Acid proteases [50629] (1 superfamily)
    barrel, closed; n=6, S=10, complex topology
  4. 2408656Superfamily b.50.1: Acid proteases [50630] (4 families) (S)
  5. 2408657Family b.50.1.1: Retroviral protease (retropepsin) [50631] (9 proteins)
    dimer of identical mono-domain chains, each containing (6,10) barrel
  6. 2408673Protein Human immunodeficiency virus type 1 protease [50632] (9 species)
  7. 2408719Species Human immunodeficiency virus 1 [TaxId:11676] [224867] (58 PDB entries)

PDB entries in Species: Human immunodeficiency virus 1 [TaxId: 11676]:

  1. Domain(s) for 1yt9:
    1. 2408839Domain d1yt9a_: 1yt9 A: [124000]
      automated match to d3bhea_
      complexed with ois
    2. 2408840Domain d1yt9b_: 1yt9 B: [124001]
      automated match to d3bhea_
      complexed with ois
  2. Domain(s) for 2avq:
    1. 2408720Domain d2avqa_: 2avq A: [162919]
      automated match to d1fgcc_
      complexed with 2nc, dms, gol; mutant
    2. 2408721Domain d2avqb_: 2avq B: [162920]
      automated match to d1fgcc_
      complexed with 2nc, dms, gol; mutant
  3. Domain(s) for 2nxl:
    1. 2408822Domain d2nxla_: 2nxl A: [166439]
      automated match to d1f7aa_
      complexed with po4
    2. 2408823Domain d2nxlb_: 2nxl B: [166440]
      automated match to d1f7aa_
      complexed with po4
  4. Domain(s) for 2qak:
    1. 2408799Domain d2qaka_: 2qak A: [167494]
      automated match to d1ajva_
      complexed with 1un; mutant
    2. 2408800Domain d2qakb_: 2qak B: [167495]
      automated match to d1ajva_
      complexed with 1un; mutant
  5. Domain(s) for 2qmp:
    1. 2408747Domain d2qmpa_: 2qmp A: [150888]
      automated match to d1a8ga_
      protein/DNA complex; protein/RNA complex; complexed with a00
    2. 2408748Domain d2qmpb_: 2qmp B: [150889]
      automated match to d1a8ga_
      protein/DNA complex; protein/RNA complex; complexed with a00
  6. Domain(s) for 2r8n:
  7. Domain(s) for 3b7v:
    1. 2408745Domain d3b7va_: 3b7v A: [154949]
      automated match to d1fgcc_
      complexed with cl, gol, na
    2. 2408746Domain d3b7vb_: 3b7v B: [154950]
      automated match to d1fgcc_
      complexed with cl, gol, na
  8. Domain(s) for 3b80:
    1. 2408761Domain d3b80a_: 3b80 A: [172473]
      automated match to d1fgcc_
      complexed with cl, na; mutant
    2. 2408762Domain d3b80b_: 3b80 B: [172474]
      automated match to d1fgcc_
      complexed with cl, na; mutant
  9. Domain(s) for 3d3t:
    1. 2408841Domain d3d3ta_: 3d3t A: [173663]
      automated match to d1a8ga_
    2. 2408842Domain d3d3tb_: 3d3t B: [173664]
      automated match to d1a8ga_
  10. Domain(s) for 3ggv:
    1. 2408830Domain d3ggva_: 3ggv A: [246290]
      automated match to d3bhea_
      complexed with ggv
    2. 2408831Domain d3ggvb_: 3ggv B: [246291]
      automated match to d3bhea_
      complexed with ggv
    3. 2408832Domain d3ggvc_: 3ggv C: [246292]
      automated match to d3bhea_
      complexed with ggv
    4. 2408833Domain d3ggvd_: 3ggv D: [246293]
      automated match to d3bhea_
      complexed with ggv
    5. 2408834Domain d3ggve_: 3ggv E: [246294]
      automated match to d3bhea_
      complexed with ggv
    6. 2408835Domain d3ggvf_: 3ggv F: [246295]
      automated match to d3bhea_
      complexed with ggv
    7. 2408836Domain d3ggvg_: 3ggv G: [246296]
      automated match to d3bhea_
      complexed with ggv
    8. 2408837Domain d3ggvh_: 3ggv H: [246297]
      automated match to d3bhea_
      complexed with ggv
    9. 2408838Domain d3ggvi_: 3ggv I: [246298]
      automated match to d3bhea_
      complexed with ggv
  11. Domain(s) for 3ixo:
    1. 2408743Domain d3ixoa_: 3ixo A: [178679]
      automated match to d1a8ga_
      protein/DNA complex; protein/RNA complex
    2. 2408744Domain d3ixob_: 3ixo B: [191743]
      automated match to d3ixoa_
      protein/DNA complex; protein/RNA complex
  12. Domain(s) for 3mim:
    1. 2408797Domain d3mima_: 3mim A: [191894]
      Other proteins in same PDB: d3mimb2
      automated match to d2npha1
    2. 2408798Domain d3mimb1: 3mim B:1001-1099 [196364]
      Other proteins in same PDB: d3mimb2
      automated match to d1qbra_
  13. Domain(s) for 3nls:
    1. 2408733Domain d3nlsa_: 3nls A: [199957]
      automated match to d1mrwa_
      complexed with 016, dms, gol, ure
    2. 2408734Domain d3nlsb_: 3nls B: [191900]
      automated match to d1mrwa_
      complexed with 016, dms, gol, ure
  14. Domain(s) for 3o99:
    1. 2408789Domain d3o99a_: 3o99 A: [200022]
      automated match to d2f3ka_
      complexed with act, k13, po4
    2. 2408790Domain d3o99b_: 3o99 B: [191906]
      automated match to d2f3ka_
      complexed with act, k13, po4
  15. Domain(s) for 3o9a:
    1. 2408815Domain d3o9aa_: 3o9a A: [182882]
      automated match to d1kzka_
      complexed with k14, po4
    2. 2408816Domain d3o9ab_: 3o9a B: [182883]
      automated match to d1kzka_
      complexed with k14, po4
  16. Domain(s) for 3o9b:
    1. 2408759Domain d3o9ba_: 3o9b A: [200023]
      automated match to d2f3ka_
      complexed with act, gol, k2a, po4
    2. 2408760Domain d3o9bb_: 3o9b B: [191907]
      automated match to d2f3ka_
      complexed with act, gol, k2a, po4
  17. Domain(s) for 3o9c:
    1. 2408769Domain d3o9ca_: 3o9c A: [182884]
      automated match to d1kzka_
      complexed with k20
    2. 2408770Domain d3o9cb_: 3o9c B: [182885]
      automated match to d1kzka_
      complexed with k20
  18. Domain(s) for 3o9d:
    1. 2408813Domain d3o9da_: 3o9d A: [182886]
      automated match to d1kzka_
      complexed with act, k19, po4
    2. 2408814Domain d3o9db_: 3o9d B: [182887]
      automated match to d1kzka_
      complexed with act, k19, po4
  19. Domain(s) for 3o9e:
    1. 2408731Domain d3o9ea_: 3o9e A: [200024]
      automated match to d2f3ka_
      complexed with a60, act, po4
    2. 2408732Domain d3o9eb_: 3o9e B: [191908]
      automated match to d2f3ka_
      complexed with a60, act, po4
  20. Domain(s) for 3o9f:
    1. 2408785Domain d3o9fa_: 3o9f A: [182888]
      automated match to d1kzka_
      complexed with act, k2d, po4
    2. 2408786Domain d3o9fb_: 3o9f B: [182889]
      automated match to d1kzka_
      complexed with act, k2d, po4
  21. Domain(s) for 3o9g:
    1. 2408777Domain d3o9ga_: 3o9g A: [182890]
      automated match to d1kzka_
      complexed with f53, po4
    2. 2408778Domain d3o9gb_: 3o9g B: [182891]
      automated match to d1kzka_
      complexed with f53, po4
  22. Domain(s) for 3o9h:
    1. 2408783Domain d3o9ha_: 3o9h A: [182892]
      automated match to d1kzka_
      complexed with act, k2e, po4
    2. 2408784Domain d3o9hb_: 3o9h B: [182893]
      automated match to d1kzka_
      complexed with act, k2e, po4
  23. Domain(s) for 3o9i:
    1. 2408727Domain d3o9ia_: 3o9i A: [182894]
      automated match to d1kzka_
      complexed with a61, po4
    2. 2408728Domain d3o9ib_: 3o9i B: [182895]
      automated match to d1kzka_
      complexed with a61, po4
  24. Domain(s) for 3r4b:
    1. 2408817Domain d3r4ba_: 3r4b A: [184797]
      automated match to d1kzka_
      complexed with 74t, po4
    2. 2408818Domain d3r4bb_: 3r4b B: [184798]
      automated match to d1kzka_
      complexed with 74t, po4
  25. Domain(s) for 3sa3:
    1. 2408775Domain d3sa3a_: 3sa3 A: [192038]
      automated match to d2f3ka_
      complexed with 23x, act, po4
    2. 2408776Domain d3sa3b_: 3sa3 B: [192039]
      automated match to d2f3ka_
      complexed with 23x, act, po4
  26. Domain(s) for 3sa4:
    1. 2408805Domain d3sa4a_: 3sa4 A: [192040]
      automated match to d2f3ka_
      complexed with act, f72, po4
    2. 2408806Domain d3sa4b_: 3sa4 B: [192041]
      automated match to d2f3ka_
      complexed with act, f72, po4
  27. Domain(s) for 3sa5:
    1. 2408779Domain d3sa5a_: 3sa5 A: [192042]
      automated match to d2f3ka_
      complexed with a69, act, po4
    2. 2408780Domain d3sa5b_: 3sa5 B: [192043]
      automated match to d2f3ka_
      complexed with a69, act, po4
  28. Domain(s) for 3sa6:
    1. 2408791Domain d3sa6a_: 3sa6 A: [192044]
      automated match to d2f3ka_
      complexed with f71, po4
    2. 2408792Domain d3sa6b_: 3sa6 B: [192045]
      automated match to d2f3ka_
      complexed with f71, po4
  29. Domain(s) for 3sa7:
    1. 2408755Domain d3sa7a_: 3sa7 A: [192046]
      automated match to d2f3ka_
      complexed with 55a, po4
    2. 2408756Domain d3sa7b_: 3sa7 B: [192047]
      automated match to d2f3ka_
      complexed with 55a, po4
  30. Domain(s) for 3sa8:
    1. 2408757Domain d3sa8a_: 3sa8 A: [192048]
      automated match to d2f3ka_
      complexed with act, k83, po4
    2. 2408758Domain d3sa8b_: 3sa8 B: [192049]
      automated match to d2f3ka_
      complexed with act, k83, po4
  31. Domain(s) for 3sa9:
    1. 2408787Domain d3sa9a_: 3sa9 A: [192050]
      automated match to d2f3ka_
      complexed with a68, act, po4
    2. 2408788Domain d3sa9b_: 3sa9 B: [192051]
      automated match to d2f3ka_
      complexed with a68, act, po4
  32. Domain(s) for 3saa:
    1. 2408819Domain d3saaa_: 3saa A: [192052]
      automated match to d2f3ka_
      complexed with 77f, po4
    2. 2408820Domain d3saab_: 3saa B: [192053]
      automated match to d2f3ka_
      complexed with 77f, po4
  33. Domain(s) for 3sab:
    1. 2408753Domain d3saba_: 3sab A: [192054]
      automated match to d2f3ka_
      complexed with f78, po4
    2. 2408754Domain d3sabb_: 3sab B: [192055]
      automated match to d2f3ka_
      complexed with f78, po4
  34. Domain(s) for 3sac:
    1. 2408751Domain d3saca_: 3sac A: [192056]
      automated match to d2f3ka_
      complexed with af8, po4
    2. 2408752Domain d3sacb_: 3sac B: [192057]
      automated match to d2f3ka_
      complexed with af8, po4
  35. Domain(s) for 4djo:
    1. 2408795Domain d4djoa_: 4djo A: [192330]
      automated match to d2f3ka_
      complexed with act, gol, mk5, po4
    2. 2408796Domain d4djob_: 4djo B: [192331]
      automated match to d2f3ka_
      complexed with act, gol, mk5, po4
  36. Domain(s) for 4djp:
    1. 2408739Domain d4djpa_: 4djp A: [192332]
      automated match to d2f3ka_
      complexed with m73, po4
    2. 2408740Domain d4djpb_: 4djp B: [192333]
      automated match to d2f3ka_
      complexed with m73, po4
  37. Domain(s) for 4djq:
    1. 2408741Domain d4djqa_: 4djq A: [192334]
      automated match to d2f3ka_
      complexed with m86, po4
    2. 2408742Domain d4djqb_: 4djq B: [192335]
      automated match to d2f3ka_
      complexed with m86, po4
  38. Domain(s) for 4djr:
    1. 2408763Domain d4djra_: 4djr A: [192336]
      automated match to d2f3ka_
      complexed with 0kj, po4
    2. 2408764Domain d4djrb_: 4djr B: [192337]
      automated match to d2f3ka_
      complexed with 0kj, po4
  39. Domain(s) for 4ej8:
    1. 2408826Domain d4ej8a_: 4ej8 A: [196943]
      automated match to d2aoda_
      complexed with 1f1, dms, edo
    2. 2408827Domain d4ej8b_: 4ej8 B: [201849]
      automated match to d4ejlb_
      complexed with 1f1, dms, edo
  40. Domain(s) for 4ejl:
    1. 2408828Domain d4ejla_: 4ejl A: [201850]
      automated match to d4ejlb_
      complexed with dms, gol, iop, peg
    2. 2408829Domain d4ejlb_: 4ejl B: [196942]
      automated match to d2aoda_
      complexed with dms, gol, iop, peg
  41. Domain(s) for 4fl8:
    1. 2408722Domain d4fl8a_: 4fl8 A: [192818]
      automated match to d2aoda_
      complexed with cl, gol
    2. 2408723Domain d4fl8b_: 4fl8 B: [192505]
      automated match to d2aoda_
      complexed with cl, gol
  42. Domain(s) for 4flg:
    1. 2408724Domain d4flga_: 4flg A: [221265]
      automated match to d3vf5a_
      complexed with cl, glu, gol, ile, na; mutant
    2. 2408725Domain d4flgb_: 4flg B: [221266]
      automated match to d3vf5a_
      complexed with cl, glu, gol, ile, na; mutant
  43. Domain(s) for 4k4q:
    1. 2408773Domain d4k4qa_: 4k4q A: [227955]
      automated match to d3ekya_
      complexed with 06b, 3tl, bme, dms, no3
    2. 2408774Domain d4k4qb_: 4k4q B: [235099]
      automated match to d4k4qa_
      complexed with 06b, 3tl, bme, dms, no3
  44. Domain(s) for 4njt:
    1. 2408801Domain d4njta_: 4njt A: [238264]
      automated match to d3mima_
      complexed with 017
    2. 2408802Domain d4njtb_: 4njt B: [238263]
      automated match to d3mima_
      complexed with 017
    3. 2408803Domain d4njtc_: 4njt C: [263149]
      automated match to d4njta_
      complexed with 017
    4. 2408804Domain d4njtd_: 4njt D: [263150]
      automated match to d4njta_
      complexed with 017
  45. Domain(s) for 4njv:
    1. 2408765Domain d4njva_: 4njv A: [266935]
      automated match to d4njta_
      complexed with rit
    2. 2408766Domain d4njvb_: 4njv B: [266936]
      automated match to d4njta_
      complexed with rit
    3. 2408767Domain d4njvc_: 4njv C: [266937]
      automated match to d4njta_
      complexed with rit
    4. 2408768Domain d4njvd_: 4njv D: [266938]
      automated match to d4njta_
      complexed with rit
  46. Domain(s) for 4q1w:
    1. 2408771Domain d4q1wa_: 4q1w A: [308064]
      automated match to d3ekya_
      complexed with 017, act, po4; mutant
    2. 2408772Domain d4q1wb_: 4q1w B: [308065]
      automated match to d3ekya_
      complexed with 017, act, po4; mutant
  47. Domain(s) for 4q1x:
    1. 2408781Domain d4q1xa_: 4q1x A: [308066]
      automated match to d3ekya_
      complexed with 017, gol, po4; mutant
    2. 2408782Domain d4q1xb_: 4q1x B: [308067]
      automated match to d3ekya_
      complexed with 017, gol, po4; mutant
  48. Domain(s) for 4q1y:
    1. 2408737Domain d4q1ya_: 4q1y A: [308068]
      automated match to d3ekya_
      complexed with 017, act, po4; mutant
    2. 2408738Domain d4q1yb_: 4q1y B: [308069]
      automated match to d3ekya_
      complexed with 017, act, po4; mutant
  49. Domain(s) for 5cok:
    1. 2408811Domain d5coka_: 5cok A: [280288]
      automated match to d3ggva_
      complexed with 52u
    2. 2408812Domain d5cokb_: 5cok B: [280290]
      automated match to d3ggva_
      complexed with 52u
  50. Domain(s) for 5con:
    1. 2408807Domain d5cona_: 5con A: [280287]
      automated match to d3ggva_
      complexed with 52w
    2. 2408808Domain d5conb_: 5con B: [280289]
      automated match to d3ggva_
      complexed with 52w
  51. Domain(s) for 5coo:
    1. 2408809Domain d5cooa_: 5coo A: [280285]
      automated match to d3ggva_
      complexed with 52z
    2. 2408810Domain d5coob_: 5coo B: [280286]
      automated match to d3ggva_
      complexed with 52z
  52. Domain(s) for 5cop:
    1. 2408824Domain d5copa_: 5cop A: [280283]
      automated match to d3ggva_
      complexed with 53f
    2. 2408825Domain d5copb_: 5cop B: [280284]
      automated match to d3ggva_
      complexed with 53f
  53. Domain(s) for 5vj3:
  54. Domain(s) for 5w5w:
    1. 2408843Domain d5w5wa_: 5w5w A: [353788]
      automated match to d4ej8a_
      complexed with 3tl, dms, hv9
    2. 2408844Domain d5w5wb_: 5w5w B: [353808]
      automated match to d4ej8a_
      complexed with 3tl, dms, hv9
  55. Domain(s) for 6dil:
    1. 2408749Domain d6dila_: 6dil A: [358990]
      automated match to d3vf7a_
      complexed with act, cl, gol, na, tpv; mutant
    2. 2408750Domain d6dilb_: 6dil B: [358914]
      automated match to d3vf7a_
      complexed with act, cl, gol, na, tpv; mutant
  56. Domain(s) for 6dj2:
    1. 2408735Domain d6dj2a_: 6dj2 A: [358839]
      automated match to d3vf7a_
      complexed with ab1, cl, na; mutant
    2. 2408736Domain d6dj2b_: 6dj2 B: [358941]
      automated match to d3vf7a_
      complexed with ab1, cl, na; mutant
  57. Domain(s) for 6dj5:
    1. 2408793Domain d6dj5a_: 6dj5 A: [358925]
      automated match to d3vf7a_
      complexed with cl, g52, gol, na; mutant
    2. 2408794Domain d6dj5b_: 6dj5 B: [358919]
      automated match to d3vf7a_
      complexed with cl, g52, gol, na; mutant
  58. Domain(s) for 6dj7:
    1. 2408729Domain d6dj7a_: 6dj7 A: [358848]
      automated match to d3vf7a_
      complexed with act, cl, g10, gol, na; mutant
    2. 2408730Domain d6dj7b_: 6dj7 B: [359085]
      automated match to d3vf7a_
      complexed with act, cl, g10, gol, na; mutant

More info for Species Human immunodeficiency virus 1 [TaxId:11676] from b.50.1.1 Human immunodeficiency virus type 1 protease

Timeline for Species Human immunodeficiency virus 1 [TaxId:11676] from b.50.1.1 Human immunodeficiency virus type 1 protease: