Lineage for Species: Human immunodeficiency virus 1 [TaxId: 11676]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2058814Fold b.50: Acid proteases [50629] (1 superfamily)
    barrel, closed; n=6, S=10, complex topology
  4. 2058815Superfamily b.50.1: Acid proteases [50630] (4 families) (S)
  5. 2058816Family b.50.1.1: Retroviral protease (retropepsin) [50631] (9 protein domains)
    dimer of identical mono-domain chains, each containing (6,10) barrel
  6. 2058832Protein Human immunodeficiency virus type 1 protease [50632] (9 species)
  7. 2058878Species Human immunodeficiency virus 1 [TaxId:11676] [224867] (50 PDB entries)

PDB entries in Species: Human immunodeficiency virus 1 [TaxId: 11676]:

  1. Domain(s) for 1yt9:
    1. 2058987Domain d1yt9a_: 1yt9 A: [124000]
      automated match to d3bhea_
      complexed with ois
    2. 2058988Domain d1yt9b_: 1yt9 B: [124001]
      automated match to d3bhea_
      complexed with ois
  2. Domain(s) for 2avq:
    1. 2058880Domain d2avqa_: 2avq A: [162919]
      automated match to d1fgcc_
      complexed with 2nc, dms, gol; mutant
    2. 2058881Domain d2avqb_: 2avq B: [162920]
      automated match to d1fgcc_
      complexed with 2nc, dms, gol; mutant
  3. Domain(s) for 2nxl:
    1. 2058936Domain d2nxla_: 2nxl A: [166439]
      automated match to d1f7aa_
      complexed with po4
    2. 2058937Domain d2nxlb_: 2nxl B: [166440]
      automated match to d1f7aa_
      complexed with po4
  4. Domain(s) for 2qak:
    1. 2058958Domain d2qaka_: 2qak A: [167494]
      automated match to d1ajva_
      complexed with 1un; mutant
    2. 2058959Domain d2qakb_: 2qak B: [167495]
      automated match to d1ajva_
      complexed with 1un; mutant
  5. Domain(s) for 2qmp:
    1. 2058926Domain d2qmpa_: 2qmp A: [150888]
      automated match to d1a8ga_
      protein/DNA complex; protein/RNA complex; complexed with a00
    2. 2058927Domain d2qmpb_: 2qmp B: [150889]
      automated match to d1a8ga_
      protein/DNA complex; protein/RNA complex; complexed with a00
  6. Domain(s) for 2r8n:
  7. Domain(s) for 3d3t:
    1. 2058976Domain d3d3ta_: 3d3t A: [173663]
      automated match to d1a8ga_
    2. 2058977Domain d3d3tb_: 3d3t B: [173664]
      automated match to d1a8ga_
  8. Domain(s) for 3ggv:
    1. 2058978Domain d3ggva_: 3ggv A: [246290]
      automated match to d3bhea_
      complexed with ggv
    2. 2058979Domain d3ggvb_: 3ggv B: [246291]
      automated match to d3bhea_
      complexed with ggv
    3. 2058980Domain d3ggvc_: 3ggv C: [246292]
      automated match to d3bhea_
      complexed with ggv
    4. 2058981Domain d3ggvd_: 3ggv D: [246293]
      automated match to d3bhea_
      complexed with ggv
    5. 2058982Domain d3ggve_: 3ggv E: [246294]
      automated match to d3bhea_
      complexed with ggv
    6. 2058983Domain d3ggvf_: 3ggv F: [246295]
      automated match to d3bhea_
      complexed with ggv
    7. 2058984Domain d3ggvg_: 3ggv G: [246296]
      automated match to d3bhea_
      complexed with ggv
    8. 2058985Domain d3ggvh_: 3ggv H: [246297]
      automated match to d3bhea_
      complexed with ggv
    9. 2058986Domain d3ggvi_: 3ggv I: [246298]
      automated match to d3bhea_
      complexed with ggv
  9. Domain(s) for 3ixo:
    1. 2058922Domain d3ixoa_: 3ixo A: [178679]
      automated match to d1a8ga_
      protein/DNA complex; protein/RNA complex
    2. 2058923Domain d3ixob_: 3ixo B: [191743]
      automated match to d3ixoa_
      protein/DNA complex; protein/RNA complex
  10. Domain(s) for 3mim:
    1. 2058938Domain d3mima_: 3mim A: [191894]
      Other proteins in same PDB: d3mimb2
      automated match to d2npha1
    2. 2058939Domain d3mimb1: 3mim B:1001-1099 [196364]
      Other proteins in same PDB: d3mimb2
      automated match to d1qbra_
  11. Domain(s) for 3nls:
    1. 2058912Domain d3nlsa_: 3nls A: [199957]
      automated match to d1mrwa_
      complexed with 016, dms, gol, ure
    2. 2058913Domain d3nlsb_: 3nls B: [191900]
      automated match to d1mrwa_
      complexed with 016, dms, gol, ure
  12. Domain(s) for 3o99:
    1. 2058956Domain d3o99a_: 3o99 A: [200022]
      automated match to d2f3ka_
      complexed with act, k13, po4
    2. 2058957Domain d3o99b_: 3o99 B: [191906]
      automated match to d2f3ka_
      complexed with act, k13, po4
  13. Domain(s) for 3o9a:
    1. 2058952Domain d3o9aa_: 3o9a A: [182882]
      automated match to d1kzka_
      complexed with k14, po4
    2. 2058953Domain d3o9ab_: 3o9a B: [182883]
      automated match to d1kzka_
      complexed with k14, po4
  14. Domain(s) for 3o9b:
    1. 2058906Domain d3o9ba_: 3o9b A: [200023]
      automated match to d2f3ka_
      complexed with act, gol, k2a, po4
    2. 2058907Domain d3o9bb_: 3o9b B: [191907]
      automated match to d2f3ka_
      complexed with act, gol, k2a, po4
  15. Domain(s) for 3o9c:
    1. 2058946Domain d3o9ca_: 3o9c A: [182884]
      automated match to d1kzka_
      complexed with k20
    2. 2058947Domain d3o9cb_: 3o9c B: [182885]
      automated match to d1kzka_
      complexed with k20
  16. Domain(s) for 3o9d:
    1. 2058944Domain d3o9da_: 3o9d A: [182886]
      automated match to d1kzka_
      complexed with act, k19, po4
    2. 2058945Domain d3o9db_: 3o9d B: [182887]
      automated match to d1kzka_
      complexed with act, k19, po4
  17. Domain(s) for 3o9e:
    1. 2058908Domain d3o9ea_: 3o9e A: [200024]
      automated match to d2f3ka_
      complexed with a60, act, po4
    2. 2058909Domain d3o9eb_: 3o9e B: [191908]
      automated match to d2f3ka_
      complexed with a60, act, po4
  18. Domain(s) for 3o9f:
    1. 2058932Domain d3o9fa_: 3o9f A: [182888]
      automated match to d1kzka_
      complexed with act, k2d, po4
    2. 2058933Domain d3o9fb_: 3o9f B: [182889]
      automated match to d1kzka_
      complexed with act, k2d, po4
  19. Domain(s) for 3o9g:
    1. 2058924Domain d3o9ga_: 3o9g A: [182890]
      automated match to d1kzka_
      complexed with f53, po4
    2. 2058925Domain d3o9gb_: 3o9g B: [182891]
      automated match to d1kzka_
      complexed with f53, po4
  20. Domain(s) for 3o9h:
    1. 2058930Domain d3o9ha_: 3o9h A: [182892]
      automated match to d1kzka_
      complexed with act, k2e, po4
    2. 2058931Domain d3o9hb_: 3o9h B: [182893]
      automated match to d1kzka_
      complexed with act, k2e, po4
  21. Domain(s) for 3o9i:
    1. 2058900Domain d3o9ia_: 3o9i A: [182894]
      automated match to d1kzka_
      complexed with a61, po4
    2. 2058901Domain d3o9ib_: 3o9i B: [182895]
      automated match to d1kzka_
      complexed with a61, po4
  22. Domain(s) for 3r4b:
    1. 2058928Domain d3r4ba_: 3r4b A: [184797]
      automated match to d1kzka_
      complexed with 74t, po4
    2. 2058929Domain d3r4bb_: 3r4b B: [184798]
      automated match to d1kzka_
      complexed with 74t, po4
  23. Domain(s) for 3sa3:
    1. 2058902Domain d3sa3a_: 3sa3 A: [192038]
      automated match to d2f3ka_
      complexed with 23x, act, po4
    2. 2058903Domain d3sa3b_: 3sa3 B: [192039]
      automated match to d2f3ka_
      complexed with 23x, act, po4
  24. Domain(s) for 3sa4:
    1. 2058920Domain d3sa4a_: 3sa4 A: [192040]
      automated match to d2f3ka_
      complexed with act, f72, po4
    2. 2058921Domain d3sa4b_: 3sa4 B: [192041]
      automated match to d2f3ka_
      complexed with act, f72, po4
  25. Domain(s) for 3sa5:
    1. 2058904Domain d3sa5a_: 3sa5 A: [192042]
      automated match to d2f3ka_
      complexed with a69, act, po4
    2. 2058905Domain d3sa5b_: 3sa5 B: [192043]
      automated match to d2f3ka_
      complexed with a69, act, po4
  26. Domain(s) for 3sa6:
    1. 2058914Domain d3sa6a_: 3sa6 A: [192044]
      automated match to d2f3ka_
      complexed with f71, po4
    2. 2058915Domain d3sa6b_: 3sa6 B: [192045]
      automated match to d2f3ka_
      complexed with f71, po4
  27. Domain(s) for 3sa7:
    1. 2058898Domain d3sa7a_: 3sa7 A: [192046]
      automated match to d2f3ka_
      complexed with 55a, po4
    2. 2058899Domain d3sa7b_: 3sa7 B: [192047]
      automated match to d2f3ka_
      complexed with 55a, po4
  28. Domain(s) for 3sa8:
    1. 2058890Domain d3sa8a_: 3sa8 A: [192048]
      automated match to d2f3ka_
      complexed with act, k83, po4
    2. 2058891Domain d3sa8b_: 3sa8 B: [192049]
      automated match to d2f3ka_
      complexed with act, k83, po4
  29. Domain(s) for 3sa9:
    1. 2058910Domain d3sa9a_: 3sa9 A: [192050]
      automated match to d2f3ka_
      complexed with a68, act, po4
    2. 2058911Domain d3sa9b_: 3sa9 B: [192051]
      automated match to d2f3ka_
      complexed with a68, act, po4
  30. Domain(s) for 3saa:
    1. 2058934Domain d3saaa_: 3saa A: [192052]
      automated match to d2f3ka_
      complexed with 77f, po4
    2. 2058935Domain d3saab_: 3saa B: [192053]
      automated match to d2f3ka_
      complexed with 77f, po4
  31. Domain(s) for 3sab:
    1. 2058896Domain d3saba_: 3sab A: [192054]
      automated match to d2f3ka_
      complexed with f78, po4
    2. 2058897Domain d3sabb_: 3sab B: [192055]
      automated match to d2f3ka_
      complexed with f78, po4
  32. Domain(s) for 3sac:
    1. 2058892Domain d3saca_: 3sac A: [192056]
      automated match to d2f3ka_
      complexed with af8, po4
    2. 2058893Domain d3sacb_: 3sac B: [192057]
      automated match to d2f3ka_
      complexed with af8, po4
  33. Domain(s) for 4djo:
    1. 2058916Domain d4djoa_: 4djo A: [192330]
      automated match to d2f3ka_
      complexed with act, gol, mk5, po4
    2. 2058917Domain d4djob_: 4djo B: [192331]
      automated match to d2f3ka_
      complexed with act, gol, mk5, po4
  34. Domain(s) for 4djp:
    1. 2058886Domain d4djpa_: 4djp A: [192332]
      automated match to d2f3ka_
      complexed with m73, po4
    2. 2058887Domain d4djpb_: 4djp B: [192333]
      automated match to d2f3ka_
      complexed with m73, po4
  35. Domain(s) for 4djq:
    1. 2058888Domain d4djqa_: 4djq A: [192334]
      automated match to d2f3ka_
      complexed with m86, po4
    2. 2058889Domain d4djqb_: 4djq B: [192335]
      automated match to d2f3ka_
      complexed with m86, po4
  36. Domain(s) for 4djr:
    1. 2058894Domain d4djra_: 4djr A: [192336]
      automated match to d2f3ka_
      complexed with 0kj, po4
    2. 2058895Domain d4djrb_: 4djr B: [192337]
      automated match to d2f3ka_
      complexed with 0kj, po4
  37. Domain(s) for 4ej8:
    1. 2058972Domain d4ej8a_: 4ej8 A: [196943]
      automated match to d2aoda_
      complexed with 1f1, dms, edo
    2. 2058973Domain d4ej8b_: 4ej8 B: [201849]
      automated match to d4ejlb_
      complexed with 1f1, dms, edo
  38. Domain(s) for 4ejl:
    1. 2058974Domain d4ejla_: 4ejl A: [201850]
      automated match to d4ejlb_
      complexed with dms, gol, iop, peg
    2. 2058975Domain d4ejlb_: 4ejl B: [196942]
      automated match to d2aoda_
      complexed with dms, gol, iop, peg
  39. Domain(s) for 4fl8:
    1. 2058882Domain d4fl8a_: 4fl8 A: [192818]
      automated match to d2aoda_
      complexed with cl, gol
    2. 2058883Domain d4fl8b_: 4fl8 B: [192505]
      automated match to d2aoda_
      complexed with cl, gol
  40. Domain(s) for 4flg:
    1. 2058884Domain d4flga_: 4flg A: [221265]
      automated match to d3vf5a_
      complexed with cl, glu, gol, ile, na; mutant
    2. 2058885Domain d4flgb_: 4flg B: [221266]
      automated match to d3vf5a_
      complexed with cl, glu, gol, ile, na; mutant
  41. Domain(s) for 4k4q:
    1. 2058950Domain d4k4qa_: 4k4q A: [227955]
      automated match to d3ekya_
      complexed with 06b, 3tl, bme, dms, no3
    2. 2058951Domain d4k4qb_: 4k4q B: [235099]
      automated match to d4k4qa_
      complexed with 06b, 3tl, bme, dms, no3
  42. Domain(s) for 4njt:
    1. 2058960Domain d4njta_: 4njt A: [238264]
      automated match to d3mima_
      complexed with 017
    2. 2058961Domain d4njtb_: 4njt B: [238263]
      automated match to d3mima_
      complexed with 017
    3. 2058962Domain d4njtc_: 4njt C: [263149]
      automated match to d4njta_
      complexed with 017
    4. 2058963Domain d4njtd_: 4njt D: [263150]
      automated match to d4njta_
      complexed with 017
  43. Domain(s) for 4njv:
    1. 2058940Domain d4njva_: 4njv A: [266935]
      automated match to d4njta_
      complexed with rit
    2. 2058941Domain d4njvb_: 4njv B: [266936]
      automated match to d4njta_
      complexed with rit
    3. 2058942Domain d4njvc_: 4njv C: [266937]
      automated match to d4njta_
      complexed with rit
    4. 2058943Domain d4njvd_: 4njv D: [266938]
      automated match to d4njta_
      complexed with rit
  44. Domain(s) for 4q1w:
    1. 2058948Domain d4q1wa_: 4q1w A: [308064]
      automated match to d3ekya_
      complexed with 017, act, po4; mutant
    2. 2058949Domain d4q1wb_: 4q1w B: [308065]
      automated match to d3ekya_
      complexed with 017, act, po4; mutant
  45. Domain(s) for 4q1x:
    1. 2058954Domain d4q1xa_: 4q1x A: [308066]
      automated match to d3ekya_
      complexed with 017, gol, po4; mutant
    2. 2058955Domain d4q1xb_: 4q1x B: [308067]
      automated match to d3ekya_
      complexed with 017, gol, po4; mutant
  46. Domain(s) for 4q1y:
    1. 2058918Domain d4q1ya_: 4q1y A: [308068]
      automated match to d3ekya_
      complexed with 017, act, po4; mutant
    2. 2058919Domain d4q1yb_: 4q1y B: [308069]
      automated match to d3ekya_
      complexed with 017, act, po4; mutant
  47. Domain(s) for 5cok:
    1. 2058968Domain d5coka_: 5cok A: [280288]
      automated match to d3ggva_
      complexed with 52u
    2. 2058969Domain d5cokb_: 5cok B: [280290]
      automated match to d3ggva_
      complexed with 52u
  48. Domain(s) for 5con:
    1. 2058964Domain d5cona_: 5con A: [280287]
      automated match to d3ggva_
      complexed with 52w
    2. 2058965Domain d5conb_: 5con B: [280289]
      automated match to d3ggva_
      complexed with 52w
  49. Domain(s) for 5coo:
    1. 2058966Domain d5cooa_: 5coo A: [280285]
      automated match to d3ggva_
      complexed with 52z
    2. 2058967Domain d5coob_: 5coo B: [280286]
      automated match to d3ggva_
      complexed with 52z
  50. Domain(s) for 5cop:
    1. 2058970Domain d5copa_: 5cop A: [280283]
      automated match to d3ggva_
      complexed with 53f
    2. 2058971Domain d5copb_: 5cop B: [280284]
      automated match to d3ggva_
      complexed with 53f

More info for Species Human immunodeficiency virus 1 [TaxId:11676] from b.50.1.1 Human immunodeficiency virus type 1 protease

Timeline for Species Human immunodeficiency virus 1 [TaxId:11676] from b.50.1.1 Human immunodeficiency virus type 1 protease: