SCOPe 2.08: Domain d4lqwd_: 4lqw D:

Lineage for d4lqwd_ (4lqw D:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.73: Retrovirus capsid protein, N-terminal core domain [47942] (1 superfamily)
   core: 5 helices; bundle

4. Superfamily a.73.1: Retrovirus capsid protein, N-terminal core domain [47943] (2 families)

5. Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain [47944] (6 proteins)

6. Protein HIV-1 capsid protein [47945] (1 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [47946] (70 PDB entries)

8. Domain d4lqwd_: 4lqw D: [224748]
   Other proteins in same PDB: d4lqwa1, d4lqwa2, d4lqwb1, d4lqwb2
   automated match to d1m9cc_

Details for d4lqwd_

PDB Entry: 4lqw, 1.95 Å

PDB Description: Crystal structure of HIV-1 capsid N-terminal domain in complex with NUP358 cyclophilin

PDB Compounds: (D:) capsid protein p24

SCOPe Domain Sequences for d4lqwd_:

Sequence, based on SEQRES records:

>d4lqwd_ a.73.1.1 (D:) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmy

Sequence, based on observed residues (ATOM records):

>d4lqwd_ a.73.1.1 (D:) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
pivqqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvgghqa
amqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmthnppi
pvgeiykrwiilglnkivrmy

Timeline for d4lqwd_:

• d4lqwd_ first appeared in SCOPe 2.03
  
• d4lqwd_ appears in SCOPe 2.07