SCOPe 2.03: Domain d4ko4m_: 4ko4 M:

Lineage for d4ko4m_ (4ko4 M:)

1. Root: SCOPe 2.03

2. Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)

3. Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
   3 domains: (1) all-alpha; (2&3) alpha+beta

4. Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families)

5. Family e.18.1.1: Nickel-iron hydrogenase, large subunit [56763] (2 proteins)

6. Protein automated matches [190109] (5 species)
   not a true protein

7. Species Desulfomicrobium baculatum [TaxId:525897] [226721] (6 PDB entries)

8. Domain d4ko4m_: 4ko4 M: [224428]
   Other proteins in same PDB: d4ko4s_, d4ko4t_
   automated match to d1cc1l_
   complexed with ca, cl, fco, gol, h2s, ni, sf4

Details for d4ko4m_

PDB Entry: 4ko4, 2 Å

PDB Description: high x-ray dose structure of anaerobically purified dm. baculatum [nifese]-hydrogenase after crystallization under air

PDB Compounds: (M:) Nickel-dependent hydrogenase large subunit

SCOPe Domain Sequences for d4ko4m_:

Sequence; same for both SEQRES and ATOM records:

>d4ko4m_ e.18.1.1 (M:) automated matches {Desulfomicrobium baculatum [TaxId: 525897]}
gkvkisidpltrveghlkievevkdgkvvdakcsggmfrgfeqilrgrdprdssqivqri
cgvcptahctasvmaqddafgvkvttngritrnlifganylqshilhfyhlaaldyvkgp
dvspfvpryanadlltdrikdgakadatntyglnqylkaleirrichemvamfggrmphv
qgmvvggateiptadkvaeyaarfkevqkfvieeylpliytlgsvytdlfetgigwknvi
afgvfpedddyktfllkpgvyidgkdeefdsklvkeyvghsffdhsapgglhysvgetnp
npdkpgaysfvkaprykdkpcevgplarmwvqnpelspvgqkllkelygieaknfrdlgd
kafsimgrhvaraeetwltavavekwlkqvqpgaetyvkseipdaaegtgfteaprgall
hylkikdkkienyqivsatlwnanprddmgqrgpieealigvpvpdiknpvnvgrlvrsy
dpclgcavh

Timeline for d4ko4m_:

• d4ko4m_ is new in SCOPe 2.03-stable
  
• d4ko4m_ appears in SCOPe 2.04
  
• d4ko4m_ appears in the current release, SCOPe 2.08