SCOPe 2.05: Domain d4jced_: 4jce D:

Lineage for d4jced_ (4jce D:)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.0: automated matches [227135] (1 protein)
   not a true family

6. Protein automated matches [226836] (6 species)
   not a true protein

7. Species Jc polyomavirus [TaxId:10632] [224872] (5 PDB entries)

8. Domain d4jced_: 4jce D: [223687]
   automated match to d1vpsa_
   complexed with edo, gol

Details for d4jced_

PDB Entry: 4jce, 1.9 Å

PDB Description: L54F Variant of JC Polyomavirus Major Capsid Protein VP1

PDB Compounds: (D:) Major capsid protein VP1

SCOPe Domain Sequences for d4jced_:

Sequence, based on SEQRES records:

>d4jced_ b.121.6.0 (D:) automated matches {Jc polyomavirus [TaxId: 10632]}
vevlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdmlpcysva
riplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhf
fsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpd
ptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmft
nrsgsqqwrglsryfkvqlrkrrvk

Sequence, based on observed residues (ATOM records):

>d4jced_ b.121.6.0 (D:) automated matches {Jc polyomavirus [TaxId: 10632]}
vevlevktgvdsitevecfltpemgdpdehfrgfsksisisdtfesdspnrdmlpcysva
riplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
rglsryfkvqlrkrrvk

Timeline for d4jced_:

• d4jced_ first appeared in SCOPe 2.03
  
• d4jced_ appears in SCOPe 2.04
  
• d4jced_ appears in SCOPe 2.06
  
• d4jced_ appears in the current release, SCOPe 2.08