SCOPe 2.06: Domain d4jcdc_: 4jcd C:

Lineage for d4jcdc_ (4jcd C:)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.0: automated matches [227135] (1 protein)
   not a true family

6. Protein automated matches [226836] (6 species)
   not a true protein

7. Species Jc polyomavirus [TaxId:10632] [224872] (5 PDB entries)

8. Domain d4jcdc_: 4jcd C: [223681]
   automated match to d1vpsa_
   complexed with edo, gol

Details for d4jcdc_

PDB Entry: 4jcd, 2 Å

PDB Description: s268y variant of jc polyomavirus major capsid protein vp1

PDB Compounds: (C:) Major capsid protein VP1

SCOPe Domain Sequences for d4jcdc_:

Sequence, based on SEQRES records:

>d4jcdc_ b.121.6.0 (C:) automated matches {Jc polyomavirus [TaxId: 10632]}
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhff
svggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdp
trnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftn
rsgyqqwrglsryfkvqlrkrrvk

Sequence, based on observed residues (ATOM records):

>d4jcdc_ b.121.6.0 (C:) automated matches {Jc polyomavirus [TaxId: 10632]}
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeale
lqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentry
fgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgyqqwr
glsryfkvqlrkrrvk

Timeline for d4jcdc_:

• d4jcdc_ first appeared in SCOPe 2.03
  
• d4jcdc_ appears in SCOPe 2.05
  
• d4jcdc_ appears in SCOPe 2.07
  
• d4jcdc_ appears in the current release, SCOPe 2.08