SCOPe 2.03: Domain d4jcdb_: 4jcd B:

Lineage for d4jcdb_ (4jcd B:)

1. Root: SCOPe 2.03

2. Class b: All beta proteins [48724] (174 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.0: automated matches [227135] (1 protein)
   not a true family

6. Protein automated matches [226836] (5 species)
   not a true protein

7. Species Jc polyomavirus [TaxId:10632] [224872] (5 PDB entries)

8. Domain d4jcdb_: 4jcd B: [223680]
   automated match to d1vpsa_
   complexed with edo, gol

Details for d4jcdb_

PDB Entry: 4jcd, 2 Å

PDB Description: s268y variant of jc polyomavirus major capsid protein vp1

PDB Compounds: (B:) Major capsid protein VP1

SCOPe Domain Sequences for d4jcdb_:

Sequence, based on SEQRES records:

>d4jcdb_ b.121.6.0 (B:) automated matches {Jc polyomavirus [TaxId: 10632]}
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhf
fsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpd
ptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmft
nrsgyqqwrglsryfkvqlrkrrvk

Sequence, based on observed residues (ATOM records):

>d4jcdb_ b.121.6.0 (B:) automated matches {Jc polyomavirus [TaxId: 10632]}
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggea
lelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
ryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgyqq
wrglsryfkvqlrkrrvk

Timeline for d4jcdb_:

• d4jcdb_ is new in SCOPe 2.03-stable
  
• d4jcdb_ appears in SCOPe 2.04
  
• d4jcdb_ appears in the current release, SCOPe 2.08