Lineage for d4j5wd_ (4j5w D:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2008476Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2008477Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2008478Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 protein domains)
  6. 2009403Protein automated matches [190059] (14 species)
    not a true protein
  7. 2009425Species Human (Homo sapiens) [TaxId:9606] [187214] (173 PDB entries)
  8. 2009637Domain d4j5wd_: 4j5w D: [223560]
    Other proteins in same PDB: d4j5wc1
    automated match to d1lbda_
    complexed with mg

Details for d4j5wd_

PDB Entry: 4j5w (more details), 2.8 Å

PDB Description: crystal structure of the apo-pxr/rxralpha lbd heterotetramer complex
PDB Compounds: (D:) Retinoic acid receptor RXR-alpha, Nuclear receptor coactivator 1

SCOPe Domain Sequences for d4j5wd_:

Sequence, based on SEQRES records: (download)

>d4j5wd_ a.123.1.1 (D:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
nedmpverileaelavepktetyveanmglnpsspndpvtnicqaadkqlftlvewakri
phfselplddqvillragwnelliasfshrsiavkdgillatglhvhrnsahsagvgaif
drvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayckh
kypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmemleaphqmtggsg
gsshsslterhkilhrllqe

Sequence, based on observed residues (ATOM records): (download)

>d4j5wd_ a.123.1.1 (D:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
nedmpverileaelavepkpndpvtnicqaadkqlftlvewakriphfselplddqvill
ragwnelliasfshrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdmq
mdktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklllr
lpalrsiglkclehlfffkligdtpidtflmemlearhkilhrllqe

SCOPe Domain Coordinates for d4j5wd_:

Click to download the PDB-style file with coordinates for d4j5wd_.
(The format of our PDB-style files is described here.)

Timeline for d4j5wd_: