SCOPe 2.08: Domain d4j5wd_: 4j5w D:

Lineage for d4j5wd_ (4j5w D:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
   multihelical; 3 layers or orthogonally packed helices

4. Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families)

5. Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)

6. Protein automated matches [190059] (14 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187214] (171 PDB entries)

8. Domain d4j5wd_: 4j5w D: [223560]
   Other proteins in same PDB: d4j5wc1
   automated match to d1lbda_
   complexed with mg

Details for d4j5wd_

PDB Entry: 4j5w, 2.8 Å

PDB Description: crystal structure of the apo-pxr/rxralpha lbd heterotetramer complex

PDB Compounds: (D:) Retinoic acid receptor RXR-alpha, Nuclear receptor coactivator 1

SCOPe Domain Sequences for d4j5wd_:

Sequence, based on SEQRES records:

>d4j5wd_ a.123.1.1 (D:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
nedmpverileaelavepktetyveanmglnpsspndpvtnicqaadkqlftlvewakri
phfselplddqvillragwnelliasfshrsiavkdgillatglhvhrnsahsagvgaif
drvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayckh
kypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmemleaphqmtggsg
gsshsslterhkilhrllqe

Sequence, based on observed residues (ATOM records):

>d4j5wd_ a.123.1.1 (D:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
nedmpverileaelavepkpndpvtnicqaadkqlftlvewakriphfselplddqvill
ragwnelliasfshrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdmq
mdktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklllr
lpalrsiglkclehlfffkligdtpidtflmemlearhkilhrllqe

Timeline for d4j5wd_:

• d4j5wd_ first appeared in SCOPe 2.03
  
• d4j5wd_ appears in SCOPe 2.07