SCOPe 2.08: Domain d4io4b1: 4io4 B:3-248

Lineage for d4io4b1 (4io4 B:3-248)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (161 species)
   not a true protein

7. Species Adineta vaga [TaxId:104782] [226596] (6 PDB entries)

8. Domain d4io4b1: 4io4 B:3-248 [223277]
   Other proteins in same PDB: d4io4a2, d4io4b2
   automated match to d2a5tb_
   complexed with cl, gol, ser

Details for d4io4b1

PDB Entry: 4io4, 1.94 Å

PDB Description: crystal structure of the avglur1 ligand binding domain complex with serine at 1.94 angstrom resolution

PDB Compounds: (B:) AvGluR1 ligand binding domain

SCOPe Domain Sequences for d4io4b1:

Sequence, based on SEQRES records:

>d4io4b1 c.94.1.0 (B:3-248) automated matches {Adineta vaga [TaxId: 104782]}
arlkgitlrigviesvpftivanvidtsgrnttkltgyvldlieylrdkmgfvadvqlap
pntsytglvlalangdydiaigditvtsarreivafsnsisdnsmrilmrkgtlidgmdd
lkngkipynrigirigtagedyylreisggsrnfyplksrqemydsllagiidvsfmdig
taeyvtnniycnltlvgedfdkstfgivtpkewlyakdldvnilslretgildnlkkkwf
qtkacp

Sequence, based on observed residues (ATOM records):

>d4io4b1 c.94.1.0 (B:3-248) automated matches {Adineta vaga [TaxId: 104782]}
arlkgitlrigviesvpftivanvinttkltgyvldlieylrdkmgfvadvqlappntsy
tglvlalangdydiaigditvtsarreivafsnsisdnsmrilmrkgtlidgmddlkngk
ipynrigirigtagedyylreisggsrnfyplksrqemydsllagiidvsfmdigtaeyv
tnniycnltlvgedfdkstfgivtpkewlyakdldvnilslretgildnlkkkwfqtkac
p

Timeline for d4io4b1:

• d4io4b1 first appeared in SCOPe 2.03, called d4io4b_
  
• d4io4b1 appears in SCOPe 2.07