SCOPe 2.07: Domain d4io2a1: 4io2 A:3-248

Lineage for d4io2a1 (4io2 A:3-248)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (158 species)
   not a true protein

7. Species Adineta vaga [TaxId:104782] [226596] (6 PDB entries)

8. Domain d4io2a1: 4io2 A:3-248 [223272]
   Other proteins in same PDB: d4io2a2, d4io2b2
   automated match to d2a5tb_
   complexed with cl, glu

Details for d4io2a1

PDB Entry: 4io2, 1.37 Å

PDB Description: crystal structure of the avglur1 ligand binding domain complex with glutamate at 1.37 angstrom resolution

PDB Compounds: (A:) Glutamate receptor 1

SCOPe Domain Sequences for d4io2a1:

Sequence, based on SEQRES records:

>d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}
arlkgitlrigviesvpftivanvidtsgrnttkltgyvldlieylrdkmgfvadvqlap
pntsytglvlalangdydiaigditvtsarreivafsnsisdnsmrilmrkgtlidgmdd
lkngkipynrigirigtagedyylreisggsrnfyplksrqemydsllagiidvsfmdig
taeyvtnniycnltlvgedfdkstfgivtpkewlyakdldvnilslretgildnlkkkwf
qtkacp

Sequence, based on observed residues (ATOM records):

>d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}
arlkgitlrigviesvpftivanvnttkltgyvldlieylrdkmgfvadvqlappntsyt
glvlalangdydiaigditvtsarreivafsnsisdnsmrilmrkgtlidgmddlkngki
pynrigirigtagedyylreisggsrnfyplksrqemydsllagiidvsfmdigtaeyvt
nniycnltlvgedfdkstfgivtpkewlyakdldvnilslretgildnlkkkwfqtkacp

Timeline for d4io2a1:

• d4io2a1 first appeared in SCOPe 2.03, called d4io2a_
  
• d4io2a1 appears in SCOPe 2.06
  
• d4io2a1 appears in the current release, SCOPe 2.08