Lineage for d4id5b_ (4id5 B:)

  1. Root: SCOPe 2.08
  2. 3012399Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. 3016464Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 3016465Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 3016821Family e.8.1.2: Reverse transcriptase [56686] (3 proteins)
  6. 3017298Protein automated matches [190211] (7 species)
    not a true protein
  7. 3017363Species Human immunodeficiency virus type 1 [TaxId:11678] [226272] (13 PDB entries)
  8. 3017373Domain d4id5b_: 4id5 B: [223127]
    Other proteins in same PDB: d4id5a2, d4id5a3
    automated match to d1hqeb_
    protein/DNA complex; protein/RNA complex; complexed with 1ff, dms, mg, t27

Details for d4id5b_

PDB Entry: 4id5 (more details), 1.95 Å

PDB Description: hiv-1 reverse transcriptase with bound fragment at the rnase h primer grip site
PDB Compounds: (B:) p51 RT

SCOPe Domain Sequences for d4id5b_:

Sequence, based on SEQRES records: (download)

>d4id5b_ e.8.1.2 (B:) automated matches {Human immunodeficiency virus type 1 [TaxId: 11678]}
ietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaik
kkdstkwrklvdfrelnkrtqdfwevqlgiphpaglkkkksvtvldvgdayfsvpldedf
rkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqym
ddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpi
vlpekdswtvndiqklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelela
enreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtnd
vkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvk
lwyq

Sequence, based on observed residues (ATOM records): (download)

>d4id5b_ e.8.1.2 (B:) automated matches {Human immunodeficiency virus type 1 [TaxId: 11678]}
ietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaik
kkdstkwrklvdfrelnkrtqdfwevqlgiphpaglkkkksvtvldvgdayfsvpldedf
rkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqym
ddlyvgsdleigqhrtkieelrqhllrwglflwmgyelhpdkwtvqpivlpekdswtvnd
iqklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhg
vyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkit
tesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyq

SCOPe Domain Coordinates for d4id5b_:

Click to download the PDB-style file with coordinates for d4id5b_.
(The format of our PDB-style files is described here.)

Timeline for d4id5b_: