SCOPe 2.07: Domain d4gmse1: 4gms E:11-325

Lineage for d4gmse1 (4gms E:11-325)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (19 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (127 PDB entries)

8. Domain d4gmse1: 4gms E:11-325 [222003]
   Other proteins in same PDB: d4gmsa2, d4gmsb_, d4gmsc2, d4gmsd_, d4gmse2, d4gmsf_, d4gmsl1, d4gmsl2, d4gmsm1, d4gmsn1, d4gmsn2
   automated match to d1kena_
   complexed with gol, nag, pg4, so4

Details for d4gmse1

PDB Entry: 4gms, 2.95 Å

PDB Description: crystal structure of heterosubtypic fab s139/1 in complex with influenza a h3 hemagglutinin

PDB Compounds: (E:) Hemagglutinin HA1 chain

SCOPe Domain Sequences for d4gmse1:

Sequence; same for both SEQRES and ATOM records:

>d4gmse1 b.19.1.2 (E:11-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
atlclghhavpngtlvktitndqievtnatelvqssstgkicnnphrildginctlidal
lgdphcdgfqnekwdlfverskafsncypydvpdyaslrslvassgtlefinegfnwtgv
tqnggssackrgpdsgffsrlnwlyksgstypvqnvtmpnndnsdklyiwgvhhpstdke
qtnlyvqasgkvtvstkrsqqtiipnvgsrpwvrglssrisiywtivkpgdilvinsngn
liaprgyfkmrtgkssimrsdapigtcssecitpngsipndkpfqnvnkitygacpkyvk
qntlklatgmrnvpe

Timeline for d4gmse1:

• d4gmse1 first appeared in SCOPe 2.03, called d4gmse_
  
• d4gmse1 appears in SCOPe 2.06
  
• d4gmse1 appears in the current release, SCOPe 2.08