Lineage for d4fmjd_ (4fmj D:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2076457Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2076458Family b.121.6.1: Papovaviridae-like VP [88649] (3 protein domains)
  6. 2076528Protein automated matches [191200] (7 species)
    not a true protein
  7. 2076673Species Merkel cell polyomavirus [TaxId:493803] [226460] (4 PDB entries)
  8. 2076737Domain d4fmjd_: 4fmj D: [221346]
    automated match to d1vpsb_
    complexed with cl, gol, sia

Details for d4fmjd_

PDB Entry: 4fmj (more details), 2.4 Å

PDB Description: Merkel cell polyomavirus VP1 in complex with GD1a oligosaccharide
PDB Compounds: (D:) vp1

SCOPe Domain Sequences for d4fmjd_:

Sequence, based on SEQRES records: (download)

>d4fmjd_ b.121.6.1 (D:) automated matches {Merkel cell polyomavirus [TaxId: 493803]}
vevlsvvtgedsitqielylnprmgvnspdlpttsnwytytydlqpkgsspdqpikenlp
aysvarvslpmlneditcdtlqmweaisvktevvgisslinvhywdmkrvhdygagipvs
gvnyhmfaiggepldlqglvldyqtqypkttnggpitietvlgrkmtpknqgldpqakak
ldkdgnypievwcpdpsknensryygsiqtgsqtptvlqfsntlttvlldengvgplckg
dglfiscadivgflfktsgkmalhglpryfnvtlrkrwvk

Sequence, based on observed residues (ATOM records): (download)

>d4fmjd_ b.121.6.1 (D:) automated matches {Merkel cell polyomavirus [TaxId: 493803]}
vevlsvvtgedsitqielylnprmgvnspdlttsnwytytydlqpkgsspdqpikenlpa
ysvarvslpmlndtlqmweaisvktevvgisslinvhywdmkrvhdygagipvsgvnyhm
faiggepldlqglvldyqtqypktgpitietvlgrkmtpknqgldpqakakldkdgnypi
evwcpdpsknensryygsiqtgsqtptvlqfsntlttvlldengvgplckgdglfiscad
ivgflfktsgkmalhglpryfnvtlrkrwvk

SCOPe Domain Coordinates for d4fmjd_:

Click to download the PDB-style file with coordinates for d4fmjd_.
(The format of our PDB-style files is described here.)

Timeline for d4fmjd_: