SCOPe 2.06: Domain d4f62b1: 4f62 B:1-290

Lineage for d4f62b1 (4f62 B:1-290)

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.128: Terpenoid synthases [48575] (1 superfamily)
   multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers

4. Superfamily a.128.1: Terpenoid synthases [48576] (6 families)
   duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J

5. Family a.128.1.0: automated matches [196408] (1 protein)
   not a true family

6. Protein automated matches [196409] (37 species)
   not a true protein

7. Species Marinomonas sp. [TaxId:314277] [226403] (1 PDB entry)

8. Domain d4f62b1: 4f62 B:1-290 [221039]
   Other proteins in same PDB: d4f62a2, d4f62b2
   automated match to d3p8ra_
   complexed with cl, gol, so4

Details for d4f62b1

PDB Entry: 4f62, 2.1 Å

PDB Description: crystal structure of a putative farnesyl-diphosphate synthase from marinomonas sp. med121 (target efi-501980)

PDB Compounds: (B:) Geranyltranstransferase

SCOPe Domain Sequences for d4f62b1:

Sequence, based on SEQRES records:

>d4f62b1 a.128.1.0 (B:1-290) automated matches {Marinomonas sp. [TaxId: 314277]}
mnlkqfstytqsrvdqyleqqlsdyapanqlhnamryslfnggkrirpmltyasaqlvgd
issltdasaaalesihayslihddlpamdndelrrgkptchiqfdeatailagdalqtfa
fellsnptsaqpelaikliqelvvasgrngmitgqmidlssenknislaeleqmhvhktg
alikasvrmgalstgqvkpeqlakldayahaiglafqvqddiidltsdtetlgktqfsda
eankatypkllgldgakalvvrlheqaiaqisefgdksqpltdlanyiid

Sequence, based on observed residues (ATOM records):

>d4f62b1 a.128.1.0 (B:1-290) automated matches {Marinomonas sp. [TaxId: 314277]}
mnlkqfstytqsrvdqyleqqlsdyapanqlhnamryslfggkrirpmltyasaqlvgdi
ssltdasaaalesihayslihddlpamfdeatailagdalqtfafellsnptsaqpelai
kliqelvvasgrngmitgqmidlssenislaeleqmhvhktgalikasvrmgalstgqvk
peqlakldayahaiglafqvqddiidlkatypkllgldgakalvvrlheqaiaqisefgd
ksqpltdlanyiid

Timeline for d4f62b1:

• d4f62b1 first appeared in SCOPe 2.03, called d4f62b_
  
• d4f62b1 was called d4f62b_ in SCOPe 2.05
  
• d4f62b1 appears in SCOPe 2.07
  
• d4f62b1 appears in the current release, SCOPe 2.08