SCOPe 2.07: Domain d4emza_: 4emz A:

Lineage for d4emza_ (4emz A:)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
   sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold

4. Superfamily b.2.7: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor [49447] (2 families)
   duplication: one domain of this fold is inserted into another domain of the same fold

5. Family b.2.7.0: automated matches [195107] (1 protein)
   not a true family

6. Protein automated matches [195108] (2 species)
   not a true protein

7. Species Mouse (Mus musculus) [TaxId:10090] [195109] (2 PDB entries)

8. Domain d4emza_: 4emz A: [220672]
   automated match to d4en2m_

Details for d4emza_

PDB Entry: 4emz, 2.9 Å

PDB Description: HIV-1 Nef in complex with MHC-I cytoplasmic domain and Mu1 adaptin subunit of AP1 adaptor (second domain)

PDB Compounds: (A:) AP-1 complex subunit mu-1

SCOPe Domain Sequences for d4emza_:

Sequence, based on SEQRES records:

>d4emza_ b.2.7.0 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
wrsegikyrknevfldvieavnllvsangnvlrseivgsikmrvflsgmpelrlglndkv
lfdntgrgksksveledvkfhqcvrlsrfendrtisfippdgefelmsyrlnthvkpliw
iesviekhshsrieymvkaksqfkrrstannveihipvpndadspkfkttvgsvkwvpen
seivwsvksfpggkeylmrahfglpsveaedkegkppisvkfeipyfttsgiqvrylkii
eksgyqalpwvryitqngdyqlrtq

Sequence, based on observed residues (ATOM records):

>d4emza_ b.2.7.0 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
wrsegikyrknevfldvieavnllvsangnvlrseivgsikmrvflsgmpelrlglndkv
lfdntgrgksksveledvkfhqcvrlsrfendrtisfippdgefelmsyrlnthvkpliw
iesviekhshsrieymvkaksqfkrrstannveihipvpndadspkfkttvgsvkwvpen
seivwsvksfpggkeylmrahfglkppisvkfeipyfttsgiqvrylkiieksgyqalpw
vryitqngdyqlrtq

Timeline for d4emza_:

• d4emza_ first appeared in SCOPe 2.03
  
• d4emza_ appears in SCOPe 2.06
  
• d4emza_ appears in the current release, SCOPe 2.08