SCOPe 2.06: Domain d4e1ma_: 4e1m A:

Lineage for d4e1ma_ (4e1m A:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)

6. Protein automated matches [190209] (5 species)
   not a true protein

7. Species Human immunodeficiency virus type 1 [TaxId:11698] [195546] (3 PDB entries)

8. Domain d4e1ma_: 4e1m A: [220163]
   automated match to d4e1na_
   complexed with tq2

Details for d4e1ma_

PDB Entry: 4e1m, 1.9 Å

PDB Description: crystal structure of hiv-1 integrase with a non-catayltic site inhibitor

PDB Compounds: (A:) hiv-1 integrase

SCOPe Domain Sequences for d4e1ma_:

Sequence, based on SEQRES records:

>d4e1ma_ c.55.3.2 (A:) automated matches {Human immunodeficiency virus type 1 [TaxId: 11698]}
cspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsatvkaacwwagikqefgipynpqsqgviesmnkelkkiigqvrdqaehlkta
vqmavfihnkkrkggiggysagerivdiiatd

Sequence, based on observed residues (ATOM records):

>d4e1ma_ c.55.3.2 (A:) automated matches {Human immunodeficiency virus type 1 [TaxId: 11698]}
cspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsatvkaacwwagikqefgipnpqsqgviesmnkelkkiigqvrdqaehlktav
qmavfihnkkrkggysagerivdiiatd

Timeline for d4e1ma_:

• d4e1ma_ first appeared in SCOPe 2.03
  
• d4e1ma_ appears in SCOPe 2.05
  
• d4e1ma_ appears in SCOPe 2.07
  
• d4e1ma_ appears in the current release, SCOPe 2.08