SCOPe 2.08: Domain d1ggya1: 1ggy A:8-190

Lineage for d1ggya1 (1ggy A:8-190)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.18: E set domains [81296] (27 families)
   "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies

5. Family b.1.18.9: Transglutaminase N-terminal domain [81289] (1 protein)

6. Protein Transglutaminase N-terminal domain [49235] (4 species)
   elaborated with many loop insertions in the common fold

7. Species Human (Homo sapiens), blood isozyme [TaxId:9606] [49236] (9 PDB entries)
   Coagulation factor XIII

8. Domain d1ggya1: 1ggy A:8-190 [21887]
   Other proteins in same PDB: d1ggya2, d1ggya3, d1ggya4, d1ggyb2, d1ggyb3, d1ggyb4
   complexed with yb

Details for d1ggya1

PDB Entry: 1ggy, 2.5 Å

PDB Description: human factor xiii with ytterbium bound in the ion site

PDB Compounds: (A:) protein (coagulation factor xiii)

SCOPe Domain Sequences for d1ggya1:

Sequence, based on SEQRES records:

>d1ggya1 b.1.18.9 (A:8-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
fggrravppnnsnaaeddlptvelqgvvprgvnlqeflnvtsvhlfkerwdtnkvdhhtd
kyennklivrrgqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvpivselqs
gkwgakivmredrsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdtyilfnpw
ced

Sequence, based on observed residues (ATOM records):

>d1ggya1 b.1.18.9 (A:8-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
fggrravppnnsnaaeddlptveleflnvtsvhlfkerwdtnkvdhhtdkyennklivrr
gqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvpivselqsgkwgakivmre
drsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdtyilfnpwced

Timeline for d1ggya1:

• d1ggya1 first appeared (with stable ids) in SCOP 1.55
  
• d1ggya1 appears in SCOPe 2.07