SCOPe 2.08: Domain d1ggtb1: 1ggt B:8-190

Lineage for d1ggtb1 (1ggt B:8-190)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.18: E set domains [81296] (27 families)
   "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies

5. Family b.1.18.9: Transglutaminase N-terminal domain [81289] (1 protein)

6. Protein Transglutaminase N-terminal domain [49235] (4 species)
   elaborated with many loop insertions in the common fold

7. Species Human (Homo sapiens), blood isozyme [TaxId:9606] [49236] (9 PDB entries)
   Coagulation factor XIII

8. Domain d1ggtb1: 1ggt B:8-190 [21882]
   Other proteins in same PDB: d1ggta2, d1ggta3, d1ggta4, d1ggtb2, d1ggtb3, d1ggtb4

Details for d1ggtb1

PDB Entry: 1ggt, 2.65 Å

PDB Description: three-dimensional structure of a transglutaminase: human blood coagulation factor xiii

PDB Compounds: (B:) coagulation factor xiii

SCOPe Domain Sequences for d1ggtb1:

Sequence, based on SEQRES records:

>d1ggtb1 b.1.18.9 (B:8-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
fggrravppnnsnaaeddlptvelqgvvprgvnlqeflnvtsvhlfkerwdtnkvdhhtd
kyennklivrrgqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvpivselqs
gkwgakivmredrsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdtyilfnpw
ced

Sequence, based on observed residues (ATOM records):

>d1ggtb1 b.1.18.9 (B:8-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
fggrravppnnsnaaeddlptveeflnvtsvhlfkerwdtnkvdhhtdkyennklivrrg
qsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvpivselqsgkwgakivmred
rsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdtyilfnpwced

Timeline for d1ggtb1:

• d1ggtb1 first appeared (with stable ids) in SCOP 1.55
  
• d1ggtb1 appears in SCOPe 2.07