SCOPe 2.08: Domain d1f13b1: 1f13 B:6-190

Lineage for d1f13b1 (1f13 B:6-190)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.18: E set domains [81296] (27 families)
   "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies

5. Family b.1.18.9: Transglutaminase N-terminal domain [81289] (1 protein)

6. Protein Transglutaminase N-terminal domain [49235] (4 species)
   elaborated with many loop insertions in the common fold

7. Species Human (Homo sapiens), blood isozyme [TaxId:9606] [49236] (9 PDB entries)
   Coagulation factor XIII

8. Domain d1f13b1: 1f13 B:6-190 [21878]
   Other proteins in same PDB: d1f13a2, d1f13a3, d1f13a4, d1f13b2, d1f13b3, d1f13b4

Details for d1f13b1

PDB Entry: 1f13, 2.1 Å

PDB Description: recombinant human cellular coagulation factor xiii

PDB Compounds: (B:) cellular coagulation factor xiii zymogen

SCOPe Domain Sequences for d1f13b1:

Sequence, based on SEQRES records:

>d1f13b1 b.1.18.9 (B:6-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
tafggrravppnnsnaaeddlptvelqgvvprgvnlqeflnvtsvhlfkerwdtnkvdhh
tdkyennklivrrgqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvpivsel
qsgkwgakivmredrsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdtyilfn
pwced

Sequence, based on observed residues (ATOM records):

>d1f13b1 b.1.18.9 (B:6-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
tafggrravppnnsnaaeddlptvelqgvvplqeflnvtsvhlfkerwdtnkvdhhtdky
ennklivrrgqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvpivselqsgk
wgakivmredrsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdtyilfnpwce
d

Timeline for d1f13b1:

• d1f13b1 first appeared (with stable ids) in SCOP 1.55
  
• d1f13b1 appears in SCOPe 2.07