Lineage for d3vqpa_ (3vqp A:)

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1372364Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 1373755Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 1374020Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)
  6. 1374021Protein Retroviral integrase, catalytic domain [53108] (3 species)
  7. 1374022Species Human immunodeficiency virus type 1 [TaxId:11676] [53110] (37 PDB entries)
  8. 1374059Domain d3vqpa_: 3vqp A: [218039]
    automated match to d2itga_
    protein/DNA complex; protein/RNA complex; complexed with cd, cl, dbj, so4

Details for d3vqpa_

PDB Entry: 3vqp (more details), 2.1 Å

PDB Description: HIV-1 IN core domain in complex with 2,3-dihydro-1,4-benzodioxin-5-ylmethanol
PDB Compounds: (A:) Pol polyprotein

SCOPe Domain Sequences for d3vqpa_:

Sequence, based on SEQRES records: (download)

>d3vqpa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
sspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsttvkaacdwagikqedgipynpqsqgviesmnkelkkiigqvrdqaehlkta
vqmavfihnhkrkggiggysagerivdiiatd

Sequence, based on observed residues (ATOM records): (download)

>d3vqpa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
sspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsttvkaacdwagikqedgipmnkelkkiigqvrdqaehlktavqmavfihnhk
rkggiggysagerivdiiatd

SCOPe Domain Coordinates for d3vqpa_:

Click to download the PDB-style file with coordinates for d3vqpa_.
(The format of our PDB-style files is described here.)

Timeline for d3vqpa_: