Lineage for d3vqdb_ (3vqd B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2123751Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2124026Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 protein domains)
  6. 2124027Protein Retroviral integrase, catalytic domain [53108] (4 species)
  7. 2124033Species Human immunodeficiency virus type 1 [TaxId:11676] [53110] (53 PDB entries)
  8. 2124074Domain d3vqdb_: 3vqd B: [218036]
    automated match to d2itga_
    protein/DNA complex; complexed with cd, mok, so4

Details for d3vqdb_

PDB Entry: 3vqd (more details), 2 Å

PDB Description: HIV-1 IN core domain in complex with 5-methyl-3-phenyl-1,2-oxazole-4-carboxylic acid
PDB Compounds: (B:) Pol polyprotein

SCOPe Domain Sequences for d3vqdb_:

Sequence, based on SEQRES records: (download)

>d3vqdb_ c.55.3.2 (B:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtd
ngsnftsttvkaacdwagikqedgipynpqsqgviesmnkelkkiigqvrdqaehlktav
qmavfihnhkrkggiggysagerivdiiatdi

Sequence, based on observed residues (ATOM records): (download)

>d3vqdb_ c.55.3.2 (B:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtd
ngsnftsttvkaacdwagikqedesmnkelkkiigqvrdqaehlktavqmavfihnhkrk
ggiggysagerivdiiatdi

SCOPe Domain Coordinates for d3vqdb_:

Click to download the PDB-style file with coordinates for d3vqdb_.
(The format of our PDB-style files is described here.)

Timeline for d3vqdb_: