Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies) contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 the first seven superfamilies have similar phosphate-binding sites |
Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) |
Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins) members of the family may contain various insert subdomains in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain |
Protein automated matches [190099] (31 species) not a true protein |
Species Oryzias latipes [TaxId:8090] [226401] (1 PDB entry) |
Domain d3vm5a1: 3vm5 A:1-404 [217938] Other proteins in same PDB: d3vm5a2, d3vm5a3 automated match to d1smda2 complexed with ca, cl |
PDB Entry: 3vm5 (more details), 2.85 Å
SCOPe Domain Sequences for d3vm5a1:
Sequence; same for both SEQRES and ATOM records: (download)
>d3vm5a1 c.1.8.1 (A:1-404) automated matches {Oryzias latipes [TaxId: 8090]} qhnpntrdgrtaivhlfewrwadiaaecerflgpkgfagvqisppnehilvsspwrpwwq ryqpisynlcsrsggenelrdmitrcnnvgvnvyvdavinhmcgagggegthsscgswfn annkdfpsvpysnldfndgkcktgsgnienygdpyqvrdcrlvglldlalekdyvrgkva dfmnklidmgvagfrvdackhmwpgdldnvyrrlnnlntkwfpggsrpfifqevidlgge pittgeyvglgrvtefkygarlgelfrkwngqklsytknwgegwgfmadgnavvftdnhd nqrghgaggasiltfwdprlykmavgymlahpygftrvmssyswdrnfvngkdendwigp psngdgstkpvpinpdqtcgdgwvcehrwrqimnmvqfrnvvng
Timeline for d3vm5a1: