Lineage for d3s9ea1 (3s9e A:4-258)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2913607Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2913608Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2915150Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2915151Protein automated matches [190039] (161 species)
    not a true protein
  7. 2915760Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (113 PDB entries)
  8. 2915794Domain d3s9ea1: 3s9e A:4-258 [216257]
    Other proteins in same PDB: d3s9ea2, d3s9eb2
    automated match to d4igra_
    complexed with cl, glu, gol, na, po4

Details for d3s9ea1

PDB Entry: 3s9e (more details), 1.6 Å

PDB Description: crystal structure of the kainate receptor gluk3 ligand binding domain in complex with (s)-glutamate
PDB Compounds: (A:) Glutamate receptor, ionotropic kainate 3

SCOPe Domain Sequences for d3s9ea1:

Sequence, based on SEQRES records: (download)

>d3s9ea1 c.94.1.0 (A:4-258) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
tnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlvedgky
gaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgtpid
saddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqrtlt
adyallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqeedk
lhimkekwwrgsgcp

Sequence, based on observed residues (ATOM records): (download)

>d3s9ea1 c.94.1.0 (A:4-258) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
tnrslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlvedgky
gaqddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgtpid
saddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqrtlt
adyallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqeedk
lhimkekwwrcp

SCOPe Domain Coordinates for d3s9ea1:

Click to download the PDB-style file with coordinates for d3s9ea1.
(The format of our PDB-style files is described here.)

Timeline for d3s9ea1:

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Domains from same chain:
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d3s9ea2