SCOPe 2.05: Domain d3ro8d_: 3ro8 D:

Lineage for d3ro8d_ (3ro8 D:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.0: automated matches [191314] (1 protein)
   not a true family

6. Protein automated matches [190075] (72 species)
   not a true protein

7. Species Paenibacillus sp. [TaxId:324057] [193799] (3 PDB entries)

8. Domain d3ro8d_: 3ro8 D: [215944]
   automated match to d3rdkb_
   complexed with cl, mg

Details for d3ro8d_

PDB Entry: 3ro8, 1.34 Å

PDB Description: Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2

PDB Compounds: (D:) endo-1,4-beta-xylanase

SCOPe Domain Sequences for d3ro8d_:

Sequence, based on SEQRES records:

>d3ro8d_ c.1.8.0 (D:) automated matches {Paenibacillus sp. [TaxId: 324057]}
shmaplkdvykndflignaisaedlegtrlellkmhhdvvtagnamkpdalqptkgnftf
taadamidkvlaegmkmhghvlvwhqqspawlntkkddnnntvplgrdealdnlrthiqt
vmkhfgnkviswdvvneamndnpsnpadykaslrqtpwyqaigsdyveqaflaarevlde
npswniklyyndynednqnkataiynmvkdindryaaahngkllidgvgmqghynintnp
dnvklslekfislgvevsvseldvtagnnytlpenlavgqaylyaqlfklykehadhiar
vtfw

Sequence, based on observed residues (ATOM records):

>d3ro8d_ c.1.8.0 (D:) automated matches {Paenibacillus sp. [TaxId: 324057]}
shmaplkdvykndflignaisaedlegtrlellkmhhdvvtagnamkpdalqptkgnftf
taadamidkvlaegmkmhghvlvwhqqspawlntkkddnnntvplgrdealdnlrthiqt
vmkhfgnkviswdvvneamndnpsnpadykaslrqtpwyqaigsdyveqaflaarevlde
npswniklyyndynednqnkataiynmvkdindryaaahngkllidgvgmqghynintnp
dnvklslekfislgvevsvseldvtagtlpenlavgqaylyaqlfklykehadhiarvtf
w

Timeline for d3ro8d_:

• d3ro8d_ first appeared in SCOPe 2.03
  
• d3ro8d_ appears in SCOPe 2.04
  
• d3ro8d_ is called d3ro8d1 in SCOPe 2.06
  
• d3ro8d_ appears in the current release, SCOPe 2.08, called d3ro8d1