Lineage for d3rjfa3 (3rjf A:149-335)

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1446207Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
    core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123
  4. 1446208Superfamily d.218.1: Nucleotidyltransferase [81301] (15 families) (S)
  5. 1446216Family d.218.1.2: DNA polymerase beta-like [81300] (4 proteins)
    insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain
  6. 1446217Protein DNA polymerase beta, catalytic (31 kD) fragment [81578] (2 species)
  7. 1446218Species Human (Homo sapiens) [TaxId:9606] [81574] (132 PDB entries)
    Uniprot P06746
  8. 1446252Domain d3rjfa3: 3rjf A:149-335 [215873]
    Other proteins in same PDB: d3rjfa1, d3rjfa2
    automated match to d1tv9a3
    protein/DNA complex; complexed with cl, f2a, mg, na

Details for d3rjfa3

PDB Entry: 3rjf (more details), 2.3 Å

PDB Description: Ternary complex of DNA Polymerase Beta with a gapped DNA containing (syn)8odG at template position paired with non-hydrolyzable dATP analog (dApCPP)
PDB Compounds: (A:) DNA polymerase beta

SCOPe Domain Sequences for d3rjfa3:

Sequence; same for both SEQRES and ATOM records: (download)

>d3rjfa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]}
ripreemlqmqdivlnevkkvdseyiatvcgsfrrgaessgdmdvllthpsftsestkqp
kllhqvveqlqkvhfitdtlskgetkfmgvcqlpskndekeyphrridirlipkdqyycg
vlyftgsdifnknmrahalekgftineytirplgvtgvageplpvdsekdifdyiqwkyr
epkdrse

SCOPe Domain Coordinates for d3rjfa3:

Click to download the PDB-style file with coordinates for d3rjfa3.
(The format of our PDB-style files is described here.)

Timeline for d3rjfa3: