SCOPe 2.06: Domain d3rjfa1: 3rjf A:10-91

Lineage for d3rjfa1 (3rjf A:10-91)

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.60: SAM domain-like [47768] (16 superfamilies)
   4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins

4. Superfamily a.60.6: DNA polymerase beta, N-terminal domain-like [47802] (2 families)
   contains one classic and one pseudo HhH motifs

5. Family a.60.6.1: DNA polymerase beta, N-terminal domain-like [47803] (3 proteins)

6. Protein DNA polymerase beta, N-terminal (8 kD)-domain [47804] (2 species)
   topologically similar to the second domain

7. Species Human (Homo sapiens) [TaxId:9606] [47805] (145 PDB entries)
   Uniprot P06746

8. Domain d3rjfa1: 3rjf A:10-91 [215871]
   Other proteins in same PDB: d3rjfa2, d3rjfa3
   automated match to d1tv9a1
   protein/DNA complex; complexed with cl, f2a, mg, na

Details for d3rjfa1

PDB Entry: 3rjf, 2.3 Å

PDB Description: Ternary complex of DNA Polymerase Beta with a gapped DNA containing (syn)8odG at template position paired with non-hydrolyzable dATP analog (dApCPP)

PDB Compounds: (A:) DNA polymerase beta

SCOPe Domain Sequences for d3rjfa1:

Sequence; same for both SEQRES and ATOM records:

>d3rjfa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
tlnggitdmltelanfeknvsqaihkynayrkaasviakyphkiksgaeakklpgvgtki
aekideflatgklrklekirqd

Timeline for d3rjfa1:

• d3rjfa1 first appeared in SCOPe 2.03
  
• d3rjfa1 appears in SCOPe 2.05
  
• d3rjfa1 appears in SCOPe 2.07
  
• d3rjfa1 appears in the current release, SCOPe 2.08