Lineage for d3r5fa1 (3r5f A:3-139)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2106806Fold c.30: PreATP-grasp domain [52439] (1 superfamily)
    3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
    possible rudiment form of Rossmann-fold domain
  4. 2106807Superfamily c.30.1: PreATP-grasp domain [52440] (10 families) (S)
    precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function
  5. 2107110Family c.30.1.0: automated matches [227183] (1 protein)
    not a true family
  6. 2107111Protein automated matches [226903] (32 species)
    not a true protein
  7. 2107239Species Xanthomonas oryzae [TaxId:291331] [226135] (1 PDB entry)
  8. 2107240Domain d3r5fa1: 3r5f A:3-139 [215588]
    Other proteins in same PDB: d3r5fa2
    automated match to d1ehia1
    complexed with atp, mg

Details for d3r5fa1

PDB Entry: 3r5f (more details), 2.07 Å

PDB Description: Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP
PDB Compounds: (A:) D-alanine--D-alanine ligase 1

SCOPe Domain Sequences for d3r5fa1:

Sequence, based on SEQRES records: (download)

>d3r5fa1 c.30.1.0 (A:3-139) automated matches {Xanthomonas oryzae [TaxId: 291331]}

Sequence, based on observed residues (ATOM records): (download)

>d3r5fa1 c.30.1.0 (A:3-139) automated matches {Xanthomonas oryzae [TaxId: 291331]}

SCOPe Domain Coordinates for d3r5fa1:

Click to download the PDB-style file with coordinates for d3r5fa1.
(The format of our PDB-style files is described here.)

Timeline for d3r5fa1:

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