SCOPe 2.05: Domain d3qysa_: 3qys A:

Lineage for d3qysa_ (3qys A:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.15: Xylose isomerase-like [51658] (8 families)
   different families share similar but non-identical metal-binding sites

5. Family c.1.15.3: Xylose isomerase [51665] (2 proteins)

6. Protein automated matches [190298] (1 species)
   not a true protein

7. Species Streptomyces rubiginosus [TaxId:1929] [187248] (15 PDB entries)

8. Domain d3qysa_: 3qys A: [215494]
   automated match to d2glka_
   complexed with ni

Details for d3qysa_

PDB Entry: 3qys, 1.85 Å

PDB Description: Room Temperature X-ray Structure of D-Xylose Isomerase in complex with 0.6Ni2+ cation bound in M2 metal binding site at pH=5.8

PDB Compounds: (A:) xylose isomerase

SCOPe Domain Sequences for d3qysa_:

Sequence; same for both SEQRES and ATOM records:

>d3qysa_ c.1.15.3 (A:) automated matches {Streptomyces rubiginosus [TaxId: 1929]}
mnyqptpedrftfglwtvgwqgrdpfgdatrraldpvesvrrlaelgahgvtfhdddlip
fgssdsereehvkrfrqalddtgmkvpmattnlfthpvfkdggftandrdvrryalrkti
rnidlavelgaetyvawggregaesggakdvrdaldrmkeafdllgeyvtsqgydirfai
epkpneprgdillptvghalafierlerpelygvnpevgheqmaglnfphgiaqalwagk
lfhidlngqngikydqdlrfgagdlraafwlvdllesagysgprhfdfkpprtedfdgvw
asaagcmrnylilkeraaafradpevqealrasrldelarptaadglqallddrsafeef
dvdaaaargmaferldqlamdhllgarg

Timeline for d3qysa_:

• d3qysa_ first appeared in SCOPe 2.03
  
• d3qysa_ appears in SCOPe 2.04
  
• d3qysa_ appears in SCOPe 2.06
  
• d3qysa_ appears in the current release, SCOPe 2.08