SCOPe 2.08: Domain d1e6jl2: 1e6j L:106-210

Lineage for d1e6jl2 (1e6j L:106-210)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (5 families)

5. Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 proteins)

6. Protein Immunoglobulin light chain kappa constant domain, CL-kappa [88566] (4 species)

7. Species Mouse (Mus musculus) [TaxId:10090] [88567] (374 PDB entries)
   Uniprot P01837# KAC_MOUSE Ig kappa chain C region; 99% sequence identity ! SQ NA # natural chimera; best hits are: Uniprot P01637 (Ig kappa chain V-V region T1) and Uniprot P01837 (Ig kappa chain C region) ! Uniprot P01837 # KAC_MOUSE Ig kappa chain C region ! Uniprot P01837 # KAC_MOUSE (P01837) Ig kappa chain C region ! SQ NA # part of Fab 28 against HIV-1 RT ! Uniprot P01837 # ! KAC_MOUSE Ig kappa chain C region

8. Domain d1e6jl2: 1e6j L:106-210 [21454]
   Other proteins in same PDB: d1e6jh1, d1e6jh2, d1e6jl1, d1e6jp1, d1e6jp2
   part of Fab 13B5 against HIV-1 capsid protein p24

Details for d1e6jl2

PDB Entry: 1e6j, 3 Å

PDB Description: crystal structure of hiv-1 capsid protein (p24) in complex with fab13b5

PDB Compounds: (L:) immunoglobulin

SCOPe Domain Sequences for d1e6jl2:

Sequence; same for both SEQRES and ATOM records:

>d1e6jl2 b.1.1.2 (L:106-210) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}
radaaptvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqd
skdstysmsstltltkdeyerhnsytceathktstspivksfnrn

Timeline for d1e6jl2:

• d1e6jl2 first appeared (with stable ids) in SCOP 1.55
  
• d1e6jl2 appears in SCOPe 2.07