SCOPe 2.06: Domain d3ol2a1: 3ol2 A:24-501

Lineage for d3ol2a1 (3ol2 A:24-501)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.69: 7-bladed beta-propeller [50964] (15 superfamilies)
   consists of seven 4-stranded beta-sheet motifs; meander

4. Superfamily b.69.12: Sema domain [101912] (1 family)
   irregular 7-bladed beta-propeller with a large insertion in the fifth blade
   automatically mapped to Pfam PF01403

5. Family b.69.12.1: Sema domain [101913] (3 proteins)
   Pfam PF01403

6. Protein Semaphorin 4d [101914] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [101915] (2 PDB entries)

8. Domain d3ol2a1: 3ol2 A:24-501 [214425]
   Other proteins in same PDB: d3ol2a2, d3ol2a3
   automated match to d1olza2
   complexed with nag

Details for d3ol2a1

PDB Entry: 3ol2, 2.99 Å

PDB Description: receptor-ligand structure of human semaphorin 4d with plexin b1.

PDB Compounds: (A:) Semaphorin-4D

SCOPe Domain Sequences for d3ol2a1:

Sequence, based on SEQRES records:

>d3ol2a1 b.69.12.1 (A:24-501) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
fapipritwehrevhlvqfhepdiynysalllsedkdtlyigareavfavnalnisekqh
evywkvsedkkakcaekgkskqteclnyirvlqplsatslyvcgtnafqpacdhlnltsf
kflgknedgkgrcpfdpahsytsvmvdgelysgtsynflgsepiisrnsshsplrteyai
pwlnepsfvfadvirkspdspdgeddrvyffftevsveyefvfrvlipriarvckgdqgg
lrtlqkkwtsflkarlicsrpdsglvfnvlrdvfvlrspglkvpvfyalftpqlnnvgls
avcaynlstaeevfshgkymqsttveqshtkwvryngpvpkprpgacidsearaanytss
lnlpdktlqfvkdhplmddsvtpidnrprlikkdvnytqivvdrtqaldgtvydvmfvst
drgalhkaislehavhiieetqlfqdfepvqtlllsskkgnrfvyagsnsgvvqapla

Sequence, based on observed residues (ATOM records):

>d3ol2a1 b.69.12.1 (A:24-501) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
fapipritwehrevhlvqfhepdiynysalllsedkdtlyigareavfavnalnisekqh
evywkvsedkkakcaekgkskqteclnyirvlqplsatslyvcgtnafqpacdhlnltsf
kflgknedgkgrcpfdpahsytsvmvdgelysgtsynflgsepiisrnsshsplrteyai
pwlnepsfvfadvirkgeddrvyffftevsveyefvfrvlipriarvckgdqgglrtlqk
kwtsflkarlicsrpdsglvfnvlrdvfvlrspglkvpvfyalftpqlnnvglsavcayn
lstaeevfshgkymqsttveqshtkwvryngpvpkprpgacidsearaanytsslnlpdk
tlqfvkdhplmddsvtpidnrprlikkdvnytqivvdrtqaldgtvydvmfvstdrgalh
kaislehavhiieetqlfqdfepvqtlllsskkgnrfvyagsnsgvvqapla

Timeline for d3ol2a1:

• d3ol2a1 first appeared in SCOPe 2.03
  
• d3ol2a1 appears in SCOPe 2.05
  
• d3ol2a1 appears in SCOPe 2.07
  
• d3ol2a1 appears in the current release, SCOPe 2.08