SCOPe 2.03: Domain d3oiib_: 3oii B:

Lineage for d3oiib_ (3oii B:)

1. Root: SCOPe 2.03

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.116: alpha/beta knot [75216] (1 superfamily)
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot

4. Superfamily c.116.1: alpha/beta knot [75217] (9 families)
   known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
   all known members have dimeric structures

5. Family c.116.1.6: EMG1/NEP1-like [159513] (3 proteins)
   Pfam PF03587; structurally most similar to the AF1056-like family, but more decorated

6. Protein automated matches [227048] (1 species)
   not a true protein

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226029] (1 PDB entry)

8. Domain d3oiib_: 3oii B: [214345]
   automated match to d2v3ja1
   complexed with gol, sah

Details for d3oiib_

PDB Entry: 3oii, 1.85 Å

PDB Description: crystal structure of saccharomyces cerevisiae nep1/emg1 bound to s- adenosylhomocysteine

PDB Compounds: (B:) essential for mitotic growth 1

SCOPe Domain Sequences for d3oiib_:

Sequence, based on SEQRES records:

>d3oiib_ c.116.1.6 (B:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ppvltskdkitkrmivvlamaslethkissngpggdkyvllncddhqgllkkmgrdisea
rpdithqclltlldspinkagklqvyiqtsrgilievnptvriprtfkrfsglmvqllhk
lsirsvnseekllkviknpitdhlptkcrkvtlsfdapvirvqdyiekldddesicvfvg
amargkdnfadeyvdekvglsnyplsasvacskfchgaedawnil

Sequence, based on observed residues (ATOM records):

>d3oiib_ c.116.1.6 (B:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ppvltskdkitkrmivvlamaslethvllncddhqgllkkmgrdisearpdithqclltl
ldspinkagklqvyiqtsrgilievnptvriprtfkrfsglmvqllhklsirskllkvik
npitdhlptkcrkvtlsfdapvirvqdyiekldddesicvfvgamargkdnfadeyvdek
vglsnyplsasvacskfchgaedawnil

Timeline for d3oiib_:

• d3oiib_ is new in SCOPe 2.03-stable
  
• d3oiib_ appears in SCOPe 2.04
  
• d3oiib_ appears in the current release, SCOPe 2.08