Lineage for d3nxgd_ (3nxg D:)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2086376Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2087547Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2087891Family b.121.6.0: automated matches [227135] (1 protein)
    not a true family
  6. 2087892Protein automated matches [226836] (6 species)
    not a true protein
  7. 2087904Species Jc polyomavirus [TaxId:10632] [224872] (5 PDB entries)
  8. 2087918Domain d3nxgd_: 3nxg D: [214083]
    automated match to d1vpsa_
    complexed with edo, gol

Details for d3nxgd_

PDB Entry: 3nxg (more details), 1.95 Å

PDB Description: JC polyomavirus VP1
PDB Compounds: (D:) Major capsid protein VP1

SCOPe Domain Sequences for d3nxgd_:

Sequence, based on SEQRES records: (download)

>d3nxgd_ b.121.6.0 (D:) automated matches {Jc polyomavirus [TaxId: 10632]}
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhf
fsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpd
ptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmft
nrsgsqqwrglsryfkvqlrkrrvkn

Sequence, based on observed residues (ATOM records): (download)

>d3nxgd_ b.121.6.0 (D:) automated matches {Jc polyomavirus [TaxId: 10632]}
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
rglsryfkvqlrkrrvkn

SCOPe Domain Coordinates for d3nxgd_:

Click to download the PDB-style file with coordinates for d3nxgd_.
(The format of our PDB-style files is described here.)

Timeline for d3nxgd_: