SCOPe 2.05: Domain d3nxgc_: 3nxg C:

Lineage for d3nxgc_ (3nxg C:)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.0: automated matches [227135] (1 protein)
   not a true family

6. Protein automated matches [226836] (6 species)
   not a true protein

7. Species Jc polyomavirus [TaxId:10632] [224872] (5 PDB entries)

8. Domain d3nxgc_: 3nxg C: [214082]
   automated match to d1vpsa_
   complexed with edo, gol

Details for d3nxgc_

PDB Entry: 3nxg, 1.95 Å

PDB Description: JC polyomavirus VP1

PDB Compounds: (C:) Major capsid protein VP1

SCOPe Domain Sequences for d3nxgc_:

Sequence, based on SEQRES records:

>d3nxgc_ b.121.6.0 (C:) automated matches {Jc polyomavirus [TaxId: 10632]}
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhff
svggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdp
trnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftn
rsgsqqwrglsryfkvqlrkrrvkn

Sequence, based on observed residues (ATOM records):

>d3nxgc_ b.121.6.0 (C:) automated matches {Jc polyomavirus [TaxId: 10632]}
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeale
lqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentry
fgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqwr
glsryfkvqlrkrrvkn

Timeline for d3nxgc_:

• d3nxgc_ first appeared in SCOPe 2.03
  
• d3nxgc_ appears in SCOPe 2.04
  
• d3nxgc_ appears in SCOPe 2.06
  
• d3nxgc_ appears in the current release, SCOPe 2.08