Lineage for d3nxdc_ (3nxd C:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2076457Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2076790Family b.121.6.0: automated matches [227135] (1 protein)
    not a true family
  6. 2076791Protein automated matches [226836] (6 species)
    not a true protein
  7. 2076803Species Jc polyomavirus [TaxId:10632] [224872] (5 PDB entries)
  8. 2076821Domain d3nxdc_: 3nxd C: [214077]
    automated match to d1vpsa_
    complexed with edo, gol

Details for d3nxdc_

PDB Entry: 3nxd (more details), 2 Å

PDB Description: JC polyomavirus VP1 in complex with LSTc
PDB Compounds: (C:) Major capsid protein VP1

SCOPe Domain Sequences for d3nxdc_:

Sequence, based on SEQRES records: (download)

>d3nxdc_ b.121.6.0 (C:) automated matches {Jc polyomavirus [TaxId: 10632]}
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhff
svggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdp
trnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftn
rsgsqqwrglsryfkvqlrkrrvkn

Sequence, based on observed residues (ATOM records): (download)

>d3nxdc_ b.121.6.0 (C:) automated matches {Jc polyomavirus [TaxId: 10632]}
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlnedlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvgg
ealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrne
ntryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgs
qqwrglsryfkvqlrkrrvkn

SCOPe Domain Coordinates for d3nxdc_:

Click to download the PDB-style file with coordinates for d3nxdc_.
(The format of our PDB-style files is described here.)

Timeline for d3nxdc_: