SCOPe 2.05: Domain d3ml1a1: 3ml1 A:4-681

Lineage for d3ml1a1 (3ml1 A:4-681)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.81: Formate dehydrogenase/DMSO reductase, domains 1-3 [53705] (1 superfamily)
   contains of two similar intertwined domains related by pseudo dyad; duplication
   core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451

4. Superfamily c.81.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53706] (1 family)
   molybdopterine enzyme

5. Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53707] (11 proteins)
   domain 1 (residues 1-55) binds Fe4S4 cluster in FDH but not DMSO reductase

6. Protein automated matches [227025] (4 species)
   not a true protein

7. Species Ralstonia eutropha [TaxId:381666] [226101] (2 PDB entries)

8. Domain d3ml1a1: 3ml1 A:4-681 [213316]
   Other proteins in same PDB: d3ml1a2
   automated match to d1ogya2
   complexed with hec, mgd, mos, sf4

Details for d3ml1a1

PDB Entry: 3ml1, 1.6 Å

PDB Description: Crystal Structure of the Periplasmic Nitrate Reductase from Cupriavidus necator

PDB Compounds: (A:) periplasmic nitrate reductase

SCOPe Domain Sequences for d3ml1a1:

Sequence; same for both SEQRES and ATOM records:

>d3ml1a1 c.81.1.1 (A:4-681) automated matches {Ralstonia eutropha [TaxId: 381666]}
vtdsevtklkwskapcrfcgtgcgvtvavkdnkvvatqgdpqaevnkglncvkgyflski
mygqdrltrplmrmkngkydkngdfapvtwdqafdemerqfkrvlkekgptavgmfgsgq
wtvwegyaaaklykagfrsnnidpnarhcmasaaagfmrtfgmdepmgcyddfeaadafv
lwgsnmaemhpilwtrvtdrrlshpktrvvvlstfthrcfdladigiifkpqtdlamlny
ianyiirnnkvnkdfvnkhtvfkegvtdigyglrpdhplqkaaknasdpgaakvitfdef
akfvskydadyvsklsavpkakldqlaelyadpnikvmslwtmgfnqhtrgtwannmvyn
lhlltgkiatpgnspfsltgqpsacgtarevgtfshrlpadmvvtnpkhreeaeriwklp
pgtipdkpgydavlqnrmlkdgklnaywvqvnnnmqaaanlmeeglpgyrnpanfivvsd
ayptvtalaadlvlpsamwvekegaygnaerrtqfwhqlvdapgearsdlwqlvefakrf
kveevwppeliakkpeykgktlydvlyrngqvdkfplkdvnaeyhnaeakafgfylqkgl
feeyatfgrghghdlapfdayhearglrwpvvngketrwryregsdpyvkagtgfqfygn
pdgkavifalpyeppaes

Timeline for d3ml1a1:

• d3ml1a1 first appeared in SCOPe 2.03
  
• d3ml1a1 appears in SCOPe 2.04
  
• d3ml1a1 appears in SCOPe 2.06
  
• d3ml1a1 appears in the current release, SCOPe 2.08