SCOPe 2.08: Domain d3lmyb2: 3lmy B:200-552

Lineage for d3lmyb2 (3lmy B:200-552)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.0: automated matches [191314] (1 protein)
   not a true family

6. Protein automated matches [190075] (132 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [226772] (2 PDB entries)

8. Domain d3lmyb2: 3lmy B:200-552 [212947]
   Other proteins in same PDB: d3lmya1, d3lmyb1
   automated match to d2gjxa1
   complexed with cp6, nag, ndg, so4

Details for d3lmyb2

PDB Entry: 3lmy, 2.8 Å

PDB Description: the crystal structure of beta-hexosaminidase b in complex with pyrimethamine

PDB Compounds: (B:) Beta-hexosaminidase subunit beta

SCOPe Domain Sequences for d3lmyb2:

Sequence, based on SEQRES records:

>d3lmyb2 c.1.8.0 (B:200-552) automated matches {Human (Homo sapiens) [TaxId: 9606]}
fshrgilidtsrhylpvkiilktldamafnkfnvlhwhivddqsfpyqsitfpelsnkgs
yslshvytpndvrmvieyarlrgirvlpefdtpghtlswgkgqkdlltpcysrqnkldsf
gpinptlnttysflttffkeisevfpdqfihlggdevefkcwesnpkiqdfmrqkgfgtd
fkklesfyiqkvldiiatinkgsivwqevfddkaklapgtivevwkdsaypeelsrvtas
gfpvilsapwyldlisygqdwrkyykvepldfggtqkqkqlfiggeaclwgeyvdatnlt
prlwprasavgerlwsskdvrdmddaydrltrhrcrmvergiaaqplyagycn

Sequence, based on observed residues (ATOM records):

>d3lmyb2 c.1.8.0 (B:200-552) automated matches {Human (Homo sapiens) [TaxId: 9606]}
fshrgilidtsrhylpvkiilktldamafnkfnvlhwhivddqsfpyqsitfpelsnkgs
yslshvytpndvrmvieyarlrgirvlpefdtpghtlswgkgqkdlltpcysdsfgpinp
tlnttysflttffkeisevfpdqfihlggdevefkcwesnpkiqdfmrqkgfgtdfkkle
sfyiqkvldiiatinkgsivwqevfddkaklapgtivevwkdsaypeelsrvtasgfpvi
lsapwyldlisygqdwrkyykvepldfggtqkqkqlfiggeaclwgeyvdatnltprlwp
rasavgerlwsskdvrdmddaydrltrhrcrmvergiaaqplyagycn

Timeline for d3lmyb2:

• d3lmyb2 first appeared in SCOPe 2.03
  
• d3lmyb2 appears in SCOPe 2.07